Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 seq7 100 2e-16 seq9 82.4 6e-11 >seq3 Length=29132933 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||| | ||||| || || || |||||| | ||||| || ||||| ||| |||| ||| Sbjct 2317010 TTTCAGATGCAGATATTCGTGAAAACTCTCACAGGAAAGACCATCACCCTCGAGGTGGAA 2316951 Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668 ||| ||| || ||| | | || || ||||| ||||| |||||| | || Sbjct 2316950 AGCTC-CGACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCC 2316892 Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 |||||||||||| ||||| | ||| || || ||||| ||||| | | || | || || Sbjct 2316891 GGATCAGCAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGAAGGACTCTAGCAGA 2316832 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||||||| || ||||||||||| | ||| |||||||| Sbjct 2316831 CTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGTTG 2316792 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||| | ||||| || || || |||||| | ||||| || ||||| ||| |||| ||| Sbjct 2324805 TTTCAGATGCAGATATTCGTGAAAACTCTCACAGGAAAGACCATCACCCTCGAGGTGGAA 2324746 Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668 ||| ||| || ||| | | || || ||||| ||||| |||||| | || Sbjct 2324745 AGCTC-CGACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCC 2324687 Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 |||||||||||| ||||| | ||| || || ||||| ||||| | | || | || || Sbjct 2324686 GGATCAGCAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGAAGGACTCTAGCAGA 2324627 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||||||| || ||||||||||| | ||| |||||||| Sbjct 2324626 CTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGTTG 2324587 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || ||| | || || || ||||| ||| |||| ||| ||| Sbjct 9516666 ATGCAGATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTC- 9516724 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| ||||| || || ||||| | || |||||| Sbjct 9516725 CGACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCA 9516784 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||| || |||| || |||| |||| |||||||| Sbjct 9516785 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCAGAACATTGGCCGACTACAA 9516844 Query 107735 CATTCAAAAGGAGTCTACG 107753 ||| || |||||||||||| Sbjct 9516845 CATCCAGAAGGAGTCTACG 9516863 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GC 107611 || ||||| || || || |||||| | || || || || || ||| |||| ||| || Sbjct 16259083 AAGATGCAGATCTTCGTGAAAACTCTCACGGGAAAGACAATCACCCTCGAGGTGGAAAGC 16259024 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | ||| || ||| | | || ||| ||||| || || ||||| | || ||| Sbjct 16259023 TC-CGACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGGA 16258965 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 ||||||| | || || | || || || ||||| ||||| | ||| |||| ||||| Sbjct 16258964 TCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGAACCTTGGCCGACTA 16258905 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||| || |||||||||||| | ||| | || ||| Sbjct 16258904 CAACATCCAGAAGGAGTCTACGCTTCACCTTGTCTTG 16258868 >seq7 Length=27187321 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| ||||| || || || ||||| || |||| ||| ||| Sbjct 640342 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACTCTCGAGGTTGAGAGCTC- 640284 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | | || || ||||| || || |||||| | || |||||| Sbjct 640283 CGACACTATTGACAATGTCAAGGCGAAGATACAGGACAAGGAAGGCATCCCTCCGGATCA 640224 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||||| ||| ||||| ||||||||||| | || | || |||||||| Sbjct 640223 GCAGAGGCTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACGCTCGCTGACTACAA 640164 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || |||||||| ||| | ||| | || ||| Sbjct 640163 CATCCAGAAGGAGTCGACGCTTCACCTTGTCTTG 640130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| || |||||| | || ||||| ||||| || ||||| ||| ||| Sbjct 640570 ATGCAAATTTTCGTGAAAACTCTCACCGGCAAGACCATCACTCTCGAAGTCGAGAGCTC- 640512 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||| || || ||||| | || ||| || Sbjct 640511 CGACACCATCGATAACGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCA 640452 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || ||||||||||| ||||| | || |||| |||||||| Sbjct 640451 GCAGAGGCTCATCTTCGCCGGTAAACAGCTCGAGGATGGACGTACCTTGGCCGACTACAA 640392 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 640391 CATCCAGAAGGAGTCGAC 640374 >seq9 Length=38354807 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || || || || || ||||| || | || |||| ||| Sbjct 21327829 ATGCAGATCTTTGTCAAGACGTTGACCGGAAAGACCATCACTTTGGAGGTGGAGAGCTC- 21327771 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || ||| ||||| ||||| || || | || ||| || Sbjct 21327770 CGACACCATTGACAACGTTAAAGCTAAGATCCAAGATAAGGAGGGGATCCCACCGGACCA 21327711 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | ||| || || ||| |||| || | || |||| |||||||| Sbjct 21327710 GCAGAGATTGATCTTTGCCGGCAAGCAGTTGGAAGATGGTCGCACTTTGGCTGACTACAA 21327651 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || |||||||||||| | ||| |||| ||| Sbjct 21327650 CATCCAGAAGGAGTCTACGCTCCACTTGGTCTTG 21327617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398824900643764