Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1946 100 3e-16 seq7 100 3e-16 seq9 98.7 1e-15 seq4 91.5 1e-13 >seq1946 Length=8506 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 137222 CTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGA 137281 |||| || |||||||| || || |||| |||||||| |||||||| || ||| Sbjct 2158 CTTTCTGGATGTTGTAGTCAGCCAAAGTGCGGCCATCTTCGAGCTGTTTACCGGCGAAGA 2099 Query 137282 TCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTT 137341 ||||||| |||||||| ||||| || ||||||||||| || || ||| | | | Sbjct 2098 TCAGACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTGT 2039 Query 137342 CCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGA 137401 | | ||||| | || || || || | ||| | ||||||||||| | ||||| |||| Sbjct 2038 CGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCACGA 1979 Query 137402 ATATTTGCAT 137411 | || ||||| Sbjct 1978 AGATCTGCAT 1969 >seq7 Length=27187321 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | || || |||| || || ||||| || |||||||| || Sbjct 456940 GCCACCACGAAGACGGAGGACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGC 456881 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| || || || || || |||||| |||| ||||| ||||| || || || Sbjct 456880 CAAAGTGCGACCATCCTCTAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCCGGTGG 456821 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| ||||| |||||| ||| | | || | |||| | ||| || Sbjct 456820 GATGCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTGTCGATAGTGTTGGAACTTTCCAC 456761 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | |||||||||||||| ||||| ||||| || ||||| Sbjct 456760 CTCAAGAGTGATGGTCTTGCCGGTCAAGGTTTTGACGAAGATCTGCAT 456713 >seq9 Length=38354807 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | |||||| || || |||| |||||| || ||||| || ||||| || Sbjct 21303149 GCCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGGATATTGTAGTCAGC 21303208 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || || ||| ||||| || || || ||| |||||| | ||||| || ||||| Sbjct 21303209 GAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGAGG 21303268 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| || || ||| | | || | ||||| | | || || Sbjct 21303269 GATACCCTCCTTGTCTTGGATCTTAGCTTTGACATTATCAATGGTGTCGGAGCTCTCCAC 21303328 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | ||||||||||||||||| || ||||| || |||||| Sbjct 21303329 CTCCAAAGTAATGGTCTTGCCGGTCAATGTCTTAACGAAAATCTGCATA 21303377 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| |||| |||||| || ||||||| || || |||||||| ||||||||||| | Sbjct 21327375 CCTCCACGTAGACGCAACACCAAATGAAGAGTCGACTCTTTTTGAATGTTGTAATCTGCC 21327434 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || ||||| || || ||||| |||| ||||| ||||| || || || Sbjct 21327435 AAAGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 21327494 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| || || || | | || | ||||| | || || Sbjct 21327495 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAACTCTCCACC 21327554 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | ||| | ||||| ||||||| ||| || ||||| || |||||| || Sbjct 21327555 TCCAGAGTGATGGTCTTCCCGGTCAGTGTCTTAACGAAGATCTGCATACCT 21327605 >seq4 Length=50002108 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 |||||||| |||||||| || |||||||||| |||||||| ||||| || ||||||||| Sbjct 24965416 TCTTCGAGCTGTTTACCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATACCTTCTTTG 24965357 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || || || ||| | | || | ||||| | || || || || | ||| | Sbjct 24965356 TCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATG 24965297 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||| || | ||||| ||||| || ||||| Sbjct 24965296 GTCTTGCCCGTTAGGGTTTTCACGAAGATCTGCAT 24965262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488478803803200