Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 5e-11 >seq2 Length=43799612 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 167205 ATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAAT 167264 |||| ||||||||| | ||| | || || |||| | | ||||||||||||||||| Sbjct 23070991 ATTTGGAAAGAGCACATTAAACTCTCATCAACACTCATCATAGCACCAGCATTATCGAAT 23070932 Query 167265 TCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTC 167323 ||| | || ||||| || |||||||||| |||||| | | | || | ||| || || Sbjct 23070931 TCAC-CACAGTAATTAGGAGCTGAAAATATAGTAACAAGCTGTCTATCGGCAAAGAACTC 23070873 Query 167324 ATAACCATCTTCAACAAC 167341 ||||||||| || ||||| Sbjct 23070872 ATAACCATCCTCTACAAC 23070855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186650460327636