Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq10676 587 2e-163 seq3442 87.8 5e-13 >seq10676 Length=153368 Score = 587 bits (650), Expect = 2e-163 Identities = 726/983 (74%), Gaps = 10/983 (1%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | ||| || | ||||||||||| |||| |||||||| ||||||| Sbjct 1321 TAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 1262 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAG 19628 ||| | || ||| || | || | || ||||| ||||||||||| ||||| |||| Sbjct 1261 TCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAG 1203 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || |||||||| |||||||| || | Sbjct 1202 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTA 1143 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | ||| || || || | || || || || || || Sbjct 1142 TTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTATCCGATCTG 1085 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 ||||||| || ||||||||||||| |||||||| || || | |||| | || | Sbjct 1084 GGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCT 1025 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 ||||| | |||| | | ||| ||||| || |||||||||||||| | || || Sbjct 1024 ACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 965 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 964 GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT 905 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | ||||||| ||||||| || || || || |||| ||||||| | || |||| Sbjct 904 -TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCT 846 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 | ||||| ||||||| ||| | |||||||| || || || |||||||| |||||||| | Sbjct 845 CTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCAT 786 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||| | ||||| |||||||||||||| || || ||||| ||||| ||||| |||| Sbjct 785 TTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTT 726 Query 20106 CGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | ||| || | || | ||| | | || || || ||| | ||| | || | || Sbjct 725 C-TTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGG 667 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 |||| || || ||||||||||| || || ||||| ||||| ||||| ||||| ||||| Sbjct 666 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 607 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || |||||||||||||| ||| |||||||||| |||||| |||| |||||| | || Sbjct 606 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 547 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || |||||||| ||||| |||||||| |||| || || || ||| ||||| || || Sbjct 546 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 487 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || || |||||||| || ||||| || | | || | | || ||||| ||| ||||| Sbjct 486 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 427 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 |||||||| ||| | || |||||||| || || | || || ||||||||||| |||||| Sbjct 426 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 367 Query 20465 CATAACTTCCCACTTGACCTTGC 20487 || |||||||| || ||||| || Sbjct 366 CACAACTTCCCTCTAGACCTAGC 344 >seq3442 Length=4740 Score = 87.8 bits (96), Expect = 5e-13 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 20177 CAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTC 20236 |||||| |||| || || ||||| ||||| ||||| ||||| ||||| || ||||||||| Sbjct 4279 CAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTC 4338 Query 20237 CAATACGCTTCTTTCAACAAT 20257 ||||| ||| |||||||||| Sbjct 4339 CAATATGCTAGTTTCAACAAT 4359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148809931856808