Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4 100 3e-16 seq1946 96.9 3e-15 seq3 93.3 4e-14 seq9 89.7 5e-13 seq7 89.7 5e-13 >seq4 Length=50002108 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| || ||||||||||| || ||||| |||||||||||||||||||| ||| Sbjct 24965451 CTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAGA 24965392 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | |||||||| ||||| ||||| || |||||||| || || || ||| | | | Sbjct 24965391 TCAGACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTGT 24965332 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | || |||| | ||| || |||| || | || || || || || ||||| | || Sbjct 24965331 CGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCCGTTAGGGTTTTCACGA 24965272 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 24965271 AGATCTGCAT 24965262 >seq1946 Length=8506 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| || ||||||||||| || || || |||||||||||||||||||| ||| Sbjct 2158 CTTTCTGGATGTTGTAGTCAGCCAAAGTGCGGCCATCTTCGAGCTGTTTACCGGCGAAGA 2099 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | |||||||| ||||| ||||| || |||||||| || || || ||| | | | Sbjct 2098 TCAGACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTGT 2039 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | || |||| | ||| || |||| || | || || || || || ||||| | || Sbjct 2038 CGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCACGA 1979 Query 132114 AAATCTGCATGACTTATT-AGATTCCTTTTCT 132144 | |||||||| ||| || || ||| | |||| Sbjct 1978 AGATCTGCAT--CTTTTTGAGGTTCGTCTTCT 1949 >seq3 Length=29132933 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || ||| |||||||| || |||| Sbjct 16258887 GACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGACCATCCTCGAGCTGCTTTCCGGCG 16258946 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| ||||| || ||||| || || || || ||||| Sbjct 16258947 AAGATGAGACGCTGCTGATCCGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCTTTCACG 16259006 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| ||||| |||| || | || || || || |||||||| Sbjct 16259007 TTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTTTTC 16259066 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 16259067 ACGAAGATCTGCAT 16259080 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | |||||||| || |||||||||||| | |||||| | Sbjct 9517336 CGCAACACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGCTAAGGTACGACCA 9517277 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || || | |||| ||||| || || || ||||| |||||||| ||| Sbjct 9517276 TCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATGCCTTCCTTA 9517217 Query 132029 TC 132030 || Sbjct 9517216 TC 9517215 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 ||||| || | | | ||||| || || ||||||||||| ||| | ||| || ||| || Sbjct 2316331 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCT-AAGGTGCGACCATCCTC 2316389 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||| || || | |||| |||||||| ||||| ||||| |||||||| || || Sbjct 2316390 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTG 2316449 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || |||| | || | || || | |||||| || | || | || || Sbjct 2316450 AATCTTGGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGTGTGATGGTCTT 2316509 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| |||| || || | ||||||||||| Sbjct 2316510 ACCGGTCAAGGTCTTCACAAAAATCTGCAT 2316539 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 ||||| || | | | ||||| || || ||||||||||| ||| | ||| || ||| || Sbjct 2323905 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCT-AAGGTGCGACCATCCTC 2323963 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||| || || | |||| |||||||| ||||| ||||| |||||||| || || Sbjct 2323964 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTG 2324023 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || |||| | || | || || | |||||| || | || | || || Sbjct 2324024 AATCTTGGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGTGTGATGGTCTT 2324083 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| |||| || || | ||||||||||| Sbjct 2324084 ACCGGTCAAGGTCTTCACAAAAATCTGCAT 2324113 >seq9 Length=38354807 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | ||||| || || |||||||||||| | ||| || | Sbjct 21302934 CGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACCA 21302993 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || || | |||| |||||||| ||||||||||| || ||||| || Sbjct 21302994 TCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGAGGGATCCCTTCCTTG 21303053 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | || || | |||||| || | || | Sbjct 21303054 TCTTGGATCTTGGCTTTCACATTATCAATGGTGTCCGAGCTCTCCACCTCCAGTGTGATG 21303113 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || |||||||||| || || | ||| || |||||| || Sbjct 21303114 GTCTTACCAGTCAAGGTCTTGACGAAGATTTGCATGCCT 21303152 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | ||||| || || |||||||||||| | ||| || | Sbjct 21326931 CGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACCA 21326990 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || || | |||| |||||||| ||||||||||| || ||||| || Sbjct 21326991 TCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGAGGGATCCCTTCCTTG 21327050 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | || || | |||||| || | || | Sbjct 21327051 TCTTGGATCTTGGCTTTCACGTTATCAATGGTGTCCGAGCTCTCCACCTCCAGTGTGATG 21327110 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || |||||||||| || || | || ||||||||| || Sbjct 21327111 GTCTTACCAGTCAAGGTCTTGACAAAGATCTGCATGCCT 21327149 >seq7 Length=27187321 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || |||||| ||| |||||||||||||||| Sbjct 640377 GACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGTCCATCCTCGAGCTGTTTACCGGCG 640436 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| || ||||| || || || || || | Sbjct 640437 AAGATGAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACG 640496 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| ||| ||||||| || | || || || || |||||||| Sbjct 640497 TTATCGATGGTGTCGGAGCTCTCGACTTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTC 640556 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 640557 ACGAAAATTTGCAT 640570 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | |||||||| |||||||||||||| || || || ||| || Sbjct 456921 ACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCCTCT 456862 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | | |||| |||||||| || || || || |||||||| || || | Sbjct 456861 AGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGA 456802 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | || | ||| | || ||||| || | || | || || Sbjct 456801 ATTTTGGCTTTGACGTTGTCGATAGTGTTGGAACTTTCCACCTCAAGAGTGATGGTCTTG 456742 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || |||| ||||| | ||| ||||||||| Sbjct 456741 CCGGTCAAGGTTTTGACGAAGATCTGCATG 456712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476547596235360