Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq5 120 4e-22 seq2 89.7 6e-13 >seq5 Length=45943323 Score = 120 bits (132), Expect = 4e-22 Identities = 188/262 (72%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 146994 CACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAG 147053 ||| || || | |||| | || || || |||||| || ||||| || || || || || Sbjct 37434455 CACATGAGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAG 37434514 Query 147054 GCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAA 147113 |||||| ||| | || | ||| |||| ||| |||||||||||||| || |||||||| || Sbjct 37434515 GCCCATATCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAA 37434574 Query 147114 CTGGCACAGGATGTGGCACGGCGGCAGCGCCAT-GGCGGGCAGGTCCGCGGGGTTCCAGG 147172 ||| | ||||||||||| || |||||||| || | ||||| | |||||||| | Sbjct 37434575 CTGTGCGAACATGTGGCACGGAGGAAGCGCCATCAGCTTG-AGGTCAGAAGGGTTCCAAG 37434633 Query 147173 CCGAGACCACCAGCCGCCTGCTC-TCGGGGTTCCTCTTAATCTCTTCGATAACCCACCT- 147230 |||| | | | |||| | || || || || |||| |||| ||||| | || || Sbjct 37434634 CCGATAATATGATACGCC-GATCATCAGGATTGTTCTTGATCTTGTCGATTA--CATCTG 37434690 Query 147231 -CAGCTGGTCCACGCCCTGGCC 147251 |||||| || | || ||||| Sbjct 37434691 CCAGCTGATCAAATCCTTGGCC 37434712 >seq2 Length=43799612 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 146995 ACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGG 147054 ||||| || | ||| | || || || ||||| ||| ||||| || || || || || Sbjct 41543388 ACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAGGCAATGTTAAAAGGTACACCAAGA 41543447 Query 147055 CCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAAC 147114 ||||| || | || | ||| |||| || ||||||||||| || | || ||||||||| Sbjct 41543448 CCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAAAAC 41543507 Query 147115 TG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGC 147173 || ||| | |||||||| || || |||||||| ||||| | || ||||| || Sbjct 41543508 TGAGCA-AACATGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 41543566 Query 147174 CGAGACCACCAGCCGCCTGCTC-TCGGGGTTCCTCTTAATCT 147214 ||| | | | ||||| | || || ||||| |||| |||| Sbjct 41543567 CGACATTATAATCCGCC-GATCGTCAGGGTTGTTCTTGATCT 41543607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583410133526400