Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 338 9e-87 seq2371 262 6e-64 seq6 248 1e-59 >seq4 Length=50002108 Score = 338 bits (374), Expect = 9e-87 Identities = 394/525 (75%), Gaps = 10/525 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| |||| | ||| ||||| |||||| || |||||||| |||||||| Sbjct 15358562 TGTTCCCAATCCAATACCCACAGATCTGGGAGATGTAC-AAGAAGGCCGAAGCCTCCTTC 15358620 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 |||||||||||||| ||||| ||| || ||||| | |||||| | || | |||| Sbjct 15358621 TGGACCGCCGAGGAAGTCGATCTCTCCGGAGACACACGCGACTGGGAGAATCTCAACGAC 15358680 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | |||||||| |||||||| |||||||| ||||| || ||||||| ||| || ||||| Sbjct 15358681 GGAGAGCGCCACTTCATCAAACACGTCCTAGCCTTCTT-CGCCGCCTCCGACGGAATCGT 15358739 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 |||||||| ||| ||| || ||| || ||||| | | ||||| ||| || Sbjct 15358740 CCTGGAGAACCTCGCCTCCCGGTTCATGTCCGACGTCCAGGTCTCCGAGGCGCGTGCCTT 15358799 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 ||||| ||||||||||| || || ||||||||||| || | || |||||| |||| Sbjct 15358800 CTACGGCTTCCAGATCGCGATTGAGAACATCCACTCAGAGATGTATAGCCTCCTGCTCGA 15358859 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 ||||||| ||||||| |||| |||||| ||||| || |||||||| || | || Sbjct 15358860 CACCTACATCAAGGATAACAAGGAGAGGGACCATCTCTTCCGGGCCATCGAGACCATCCC 15358919 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC 1456172 | || ||| |||||| | ||||| |||||||||||| || || ||| | || Sbjct 15358920 CTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGAC-----GGATCTC-AGAC 15358973 Query 1456173 TTT-GCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| || ||| || |||||| ||| ||| |||| || || ||||| ||||| || || || Sbjct 15358974 TTTCGCGGAGAGGATCGTCGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTT 15359033 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||| | ||||| |||||||||||||| || |||||||| ||||| Sbjct 15359034 CTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGTCT 15359078 >seq2371 Length=6673 Score = 262 bits (290), Expect = 6e-64 Identities = 337/460 (73%), Gaps = 11/460 (2%) Strand=Plus/Plus Query 1455734 AACCCGA-ACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 ||||| | |||| || | ||||||| |||| ||||| || ||| ||||| |||||| | Sbjct 6217 AACCCCAGACCGATTCTGCATGTTCCCGATCCACTACCCGCAGATCTGGGAGATGTACAA 6276 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC 1455852 |||| |||| |||||||| |||||||||||||| ||||||||| | ||||| | Sbjct 6277 GAAAG-CCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAAGACACCCGCG 6335 Query 1455853 ACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909 |||||| | || | ||||| |||||| || ||| |||| |||||||||||||| | Sbjct 6336 ACTGGGAGCAAAACCTCAACGACGGCGAGCGACACTTCGTCAAACACGTCCTCGCCTTCT 6395 Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969 | ||||||| ||| || ||||| |||||| || ||| ||| || ||| || ||| Sbjct 6396 T-CGCCGCCTCCGACGGGATCGTCCTCGAGAATCTCGCCTCCCGTTTCATGTCCGACGTC 6454 Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCT 1456029 || | | ||||| || || ||||| ||||||||||||||||| ||||||||||| Sbjct 6455 CAGGTCTCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCC 6514 Query 1456030 GAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTC 1456089 || | ||| ||||| | ||||| ||| |||| ||| |||| |||||| ||| Sbjct 6515 GAGATGTACAGTCTCCTCTTAGACACTTACATCAAAGACAACAAGGAGAGGGACCATCTC 6574 Query 1456090 TTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGG 1456149 || ||||| ||||| ||| | || | || | |||||||||| | ||||| |||||||| Sbjct 6575 TTCCGCGCGATCGAGACGATCCCTTGCGTAAAGAAAAAGGCCCAATGGGCCTTGAAGTGG 6634 Query 1456150 ATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGT 1456189 ||| | ||||||| ||| |||||| || |||| Sbjct 6635 ATC-----GATGGGCCTCAGGCCTTCGCCGAGAGGATCGT 6669 >seq6 Length=53636577 Score = 248 bits (274), Expect = 1e-59 Identities = 321/440 (73%), Gaps = 10/440 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | ||||| || ||| ||||| |||||| | |||| |||| |||||||| Sbjct 17375683 TGTTCCCGATTCACTACCCGCAGATCTGGGAGATGTACAAGAAAG-CCGAAGCCTCCTTC 17375741 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGC 1455869 |||||||||||||| ||||||||| | ||||| | |||||| | || | | Sbjct 17375742 TGGACCGCCGAGGAAGTCGACCTCTCCCAAGACACCCGCGACTGGGAGCAAAACCTCAAC 17375801 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||| ||||||||| |||||||| |||||||||||||| || ||||||| ||| || || Sbjct 17375802 GACGGCGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGGAT 17375860 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| |||||| || ||| ||| || ||| || ||||| | | ||||| || Sbjct 17375861 CGTCCTCGAGAATCTCGCCTCCCGTTTCATGTCCGACGTCCAGGTCTCCGAGGCCCGCGC 17375920 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||| ||||||||||| ||||| ||||||||||| || | ||| ||| || | Sbjct 17375921 CTTCTACGGCTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGCCTCTTGTT 17375980 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 || || ||| |||| ||| |||| |||||| ||||| ||||| ||||| || | Sbjct 17375981 AGATACTTACATCAAAGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACCAT 17376040 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 || | || | ||| |||||| | ||||| ||||||||||| | | |||||| Sbjct 17376041 CCCTTGCGTCAAGAAGAAGGCCCAATGGGCCTTGAAGTGGATCGATA-----GGCCTCAG 17376095 Query 1456170 CACTTTGCCGAGCGGCTCGT 1456189 ||| |||||| || |||| Sbjct 17376096 GCCTTCGCCGAGAGGATCGT 17376115 Score = 87.8 bits (96), Expect = 3e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| ||||| || | | ||| ||| |||| |||| || Sbjct 45528056 ATCTTCAAGGTGCTGAAGCAGGTCCACCCT-GA--CATCGGG--ATC-TCCAGCAAGGCC 45528109 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| ||| | |||||| Sbjct 45528110 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCC 45528169 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || | | ||||||| || ||| | || | |||||||||||||| || Sbjct 45528170 AAGCTCGCTAGGTACAACAAGAAGCCGACCATCACCTCGAGGGAGATCCAGACCGCTGTT 45528229 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || | ||| |||||| || || | |||||||||||| ||||| || Sbjct 45528230 AGGCTTGTTCTGCCCGGCGAGCTCGCTAAGCACGCCGTCTCTGAGGGGAC 45528279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176781480177512