Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq10676 637 5e-178 seq3905 306 4e-78 seq3 237 2e-57 >seq10676 Length=153368 Score = 637 bits (706), Expect = 5e-178 Identities = 755/1017 (74%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438 |||||| | ||||||||||| | | || ||||| || ||||| ||||||||||| Sbjct 31980 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32039 Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498 || | || |||| ||| ||| | || | || |||||| | || || || || ||| Sbjct 32040 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 32099 Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTC 159558 | || ||||| || || || | ||||||||||| | |||||| |||||| | Sbjct 32100 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32159 Query 159559 ACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 159618 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 32160 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32219 Query 159619 CCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTT 159678 ||||| | ||||| || || || ||||| ||| | || || | ||| | |||||| Sbjct 32220 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32279 Query 159679 GCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG- 159737 |||||||||||||| ||||| | |||||||||||| |||| ||||||||| ||||||| Sbjct 32280 GCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32339 Query 159738 TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 159797 ||| ||| | || ||||| ||||| || || ||||||||||| |||||||||||||| Sbjct 32340 TCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 32398 Query 159798 CAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGG 159857 || || || || |||||||| ||||| ||| ||||||||||| |||||||| || Sbjct 32399 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 32458 Query 159858 GGTAGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCT 159914 ||||| || || ||| ||| |||| || |||| ||||||| || || ||||| | Sbjct 32459 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATT 32515 Query 159915 CAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAAT 159974 ||||| || |||||||||||||| |||||| |||| || | || ||||| || || || Sbjct 32516 GAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTAT 32575 Query 159975 CCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAA 160034 ||||||||||||||||| || || || ||||||||||| || ||||| ||||| Sbjct 32576 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 32635 Query 160035 GGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 160094 || ||| | || ||||||| ||||| |||||||| |||||||| || |||||||| || Sbjct 32636 TGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 32695 Query 160095 GTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 160154 ||| || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| || Sbjct 32696 GTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 32755 Query 160155 TGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCT 160214 ||| || || | ||| |||||| || |||| | | ||||| ||||| ||||| Sbjct 32756 TGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCT 32815 Query 160215 TCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGAC 160274 ||||| || || ||||| ||||| || | ||||| |||||||| ||||||||||| Sbjct 32816 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGAC 32875 Query 160275 CTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGA 160334 ||||| || || || || || || || ||||| |||| ||||||||||| || || Sbjct 32876 TTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGA 32935 Query 160335 TCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 ||| || ||||||||| |||| ||||||||||| || ||||| | || ||||| || Sbjct 32936 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 32992 Score = 596 bits (660), Expect = 2e-165 Identities = 738/1007 (73%), Gaps = 2/1007 (0%) Strand=Plus/Minus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 |||||| | ||| |||| || | |||||| | || |||| ||||| ||||| | Sbjct 1327 CTTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1268 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCC 157794 |||||||||||| || | | |||||| | ||| || |||| ||| | |||||||| Sbjct 1267 GATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1208 Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854 || || || ||||| || || || ||||| ||| |||| || || | || || ||||| Sbjct 1207 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1148 Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914 || || || ||||| || |||||| ||| || || ||| | || || || || || Sbjct 1147 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGAT 1088 Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974 ||||||||| ||||| |||| || ||||| || ||||||||||||| |||| | || Sbjct 1087 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 1028 Query 157975 ATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCG 158034 | ||||| | | || | | |||||||| |||||||||||||| || ||| Sbjct 1027 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 968 Query 158035 TTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGC 158094 | | |||||||| || ||||| ||| |||||||| ||||| || || || || | ||| Sbjct 967 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 908 Query 158095 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158154 || ||| | |||| || | |||||||| ||| || |||| ||||||||| || || Sbjct 907 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 848 Query 158155 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158214 |||||||||||| |||| ||| |||||||||| || || |||||||| ||||||||||| Sbjct 847 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 788 Query 158215 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 || || ||| | ||||| ||||| |||||||| || || || || |||||||||||| Sbjct 787 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 728 Query 158275 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 158333 | | || ||||| | | | || | ||||| || |||| || || || | | Sbjct 727 TTCTTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 669 Query 158334 GTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCG 158393 | || | ||||||||||||||||| || |||||||| || || || || || || || | Sbjct 668 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 609 Query 158394 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158453 | || |||||||||||||| ||| |||||||| || ||||| || || |||||| | | Sbjct 608 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 549 Query 158454 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 158513 | || ||||| || || || || ||||| || || | || | || ||||| |||| Sbjct 548 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 489 Query 158514 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158573 |||| || |||||||| |||||||| || | ||||| |||| || ||||| | || | Sbjct 488 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 429 Query 158574 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158633 | ||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| | Sbjct 428 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 369 Query 158634 CACACAACTTCCCACTGGATCTTGCTGCTGCTGAGTCTACACCTGTA 158680 | ||||||||||| || || || ||||||| ||||||| || || || Sbjct 368 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTCTCCATCTATA 322 >seq3905 Length=4339 Score = 306 bits (338), Expect = 4e-78 Identities = 320/415 (77%), Gaps = 8/415 (2%) Strand=Plus/Plus Query 159667 TGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTT 159726 ||| | |||||||||||||||||||| ||||| | |||||||||||| |||| |||||| Sbjct 1159 TGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTT 1218 Query 159727 GAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 159785 ||| ||||||| ||| ||| | || ||||| ||||| || || |||| |||||| || Sbjct 1219 GAACTTGCTCGATCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTTTGGTCCAAT 1277 Query 159786 TGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGC 159845 |||||||||||| || || || || |||||||| ||||| ||| ||||||||||| Sbjct 1278 TGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGC 1337 Query 159846 ACCTAGTTTCGGGGTAGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAGGGTTTCCA 159902 |||||||| || ||||| | || ||| ||| |||| || |||| ||||||| || Sbjct 1338 GCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CA 1394 Query 159903 CAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACT 159962 || |||| | ||||| || |||||||||||||| |||||| |||| || | || || Sbjct 1395 TAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCT 1454 Query 159963 GTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGC 160022 ||| || || || ||||||||||||||||| || || || ||||||||||| || || Sbjct 1455 GTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGC 1514 Query 160023 AAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTC 160077 ||| ||||| || ||| | | ||||||| ||||| |||||||| |||||| Sbjct 1515 AAATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGTC 1569 >seq3 Length=29132933 Score = 237 bits (262), Expect = 2e-57 Identities = 373/529 (71%), Gaps = 4/529 (1%) Strand=Plus/Plus Query 159409 GATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATATGGCC 159468 || |||||||| ||||| ||||||||||| || | || |||| ||| ||| | | Sbjct 2931774 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCTCT 2931833 Query 159469 ATTGGCGGTTGGCTTACTGGCACGACTTTTATCACGAGTTGGTACACCCACGGTCTTGCT 159528 | || |||||| | || || || |||||| | || ||||| || || || | ||| Sbjct 2931834 TTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGGCT 2931893 Query 159529 AGTTCCTACCTTGAAGGTGCTAATTTTCTCACGGCAGCTGTCTCAACGCCTGCTGATGCT 159588 |||||||| | |||||| | | || | || | || || || || |||||| || | Sbjct 2931894 AGTTCCTATTTAGAAGGTTGCAGTCTTTTAACCGATGCAGTTTCTACTCCTGCTAATAGT 2931953 Query 159589 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGG 159648 | |||||| || || | || ||||||||| | ||||| || || || ||| Sbjct 2931954 TTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTCGTTGG 2932012 Query 159649 TGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGT 159708 || ||| | | || | ||| ||||||||||||||| |||| |||| | ||| || Sbjct 2932013 TGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATAAGT 2932072 Query 159709 TTTATGCTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTAT 159767 |||||| |||| ||||||||| ||||||| ||| ||| | || ||||| ||||| || Sbjct 2932073 TTTATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGCGACCTTATAATGCAAT 2932131 Query 159768 TGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCA 159827 | ||||||||||| |||||||||||| | || || || || ||||| | ||||| Sbjct 2932132 AACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCCTC-AGGTCA 2932190 Query 159828 GTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTT 159887 ||| |||||||||||||||||||| || ||||| || || ||| | ||| | | || Sbjct 2932191 ATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCATCTT 2932250 Query 159888 CCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGA 159936 | || || || || || |||| | ||||| | |||||||||||| Sbjct 2932251 TTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGGA 2932299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572947529947200