Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq10676 600 1e-166 seq3905 210 2e-49 seq3 205 1e-47 seq69 111 2e-19 seq6 102 9e-17 seq9 100 3e-16 >seq10676 Length=153368 Score = 600 bits (664), Expect = 1e-166 Identities = 732/996 (73%), Gaps = 2/996 (0%) Strand=Plus/Minus Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019 ||||| | ||| ||||| ||| | ||||| || || | || ||||| || || || Sbjct 1326 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1267 Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 160079 |||||||| || | ||| | ||||| | ||| || |||| ||| | |||||||| Sbjct 1266 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1207 Query 160080 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 160139 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 1206 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1147 Query 160140 ATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 160199 || || || ||||| || |||| |||| || |||||| | || || ||||| ||| Sbjct 1146 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 1087 Query 160200 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTA 160259 |||||||| ||||| ||||||| ||||| || ||||||||||||| |||| | || Sbjct 1086 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1027 Query 160260 TTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCGT 160319 | ||||| | | || | | |||||||| ||||||||||||||| | |||| Sbjct 1026 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 967 Query 160320 TTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCT 160379 | |||||||| || ||||| ||| |||||||| ||||| || || || || ||||| Sbjct 966 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 907 Query 160380 GTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 160439 || ||| | | || || | |||||||| ||| || |||| ||||||||| || ||| Sbjct 906 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 847 Query 160440 TCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCG 160499 ||||||||||| |||| ||| |||||||||| || || ||||| || |||||||| || Sbjct 846 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 787 Query 160500 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGA 160559 || |||||| | || || ||||| |||||||| || || | || ||||||||| || Sbjct 786 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 727 Query 160560 AGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGG 160618 | | || ||||| | | | || | ||||| || |||| || || || | || Sbjct 726 TCTTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 668 Query 160619 TTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCGG 160678 || | ||||||||||| ||||| || |||||||| || || || || ||||| || || Sbjct 667 GTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 608 Query 160679 TCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGGC 160738 || ||||||||||||||||| |||||||| || ||||| | || |||||| | || Sbjct 607 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 548 Query 160739 AGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAA 160798 || ||||| ||||| || || ||||| |||||| | ||| |||| || ||||| ||||| Sbjct 547 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 488 Query 160799 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACAC 160858 ||| || |||||||| |||||||| || | | ||| ||||||| ||||| | || || Sbjct 487 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 428 Query 160859 CTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 160918 ||||| || | | || |||||| ||||||||||||||||||||||| ||||| || Sbjct 427 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 368 Query 160919 ACACAACTTCCCACTCGACCTCGCTGCTGCTGAGTC 160954 ||||||||||| || ||||| ||||||| |||||| Sbjct 367 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 332 Score = 509 bits (564), Expect = 2e-139 Identities = 726/1019 (71%), Gaps = 2/1019 (0%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 31980 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32039 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 32040 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 32099 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 161867 | ||| |||||||| ||||| | |||||||||||| | || ||| || ||| | Sbjct 32100 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32159 Query 161868 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 161926 || || ||||| ||||| ||| | | | | |||||| || || || || ||||| Sbjct 32160 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 32218 Query 161927 TCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGT 161986 |||||| || ||||| ||||| || ||| ||| | || || || ||| |||||| Sbjct 32219 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 32278 Query 161987 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 162046 || ||||| ||||| ||||| |||| || || ||| | ||||| |||||||| || || Sbjct 32279 TGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 32338 Query 162047 TCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 162106 | || | || || || ||||| || || ||||||||||| |||||||||||||| Sbjct 32339 ATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 32398 Query 162107 CAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGG 162166 ||||| || || || ||| | ||||| || ||||||| || || || ||||| Sbjct 32399 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 32458 Query 162167 GGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAA 162226 || || || || ||| ||||| | | ||| | ||||| || ||||| ||||| |||| Sbjct 32459 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 32518 Query 162227 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCA 162286 ||| || |||||||||||||| |||||| |||| || | || || ||| |||||||| Sbjct 32519 CCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCA 32578 Query 162287 CGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGC 162346 || | || || |||||||| |||| || ||||| || ||||| || || || Sbjct 32579 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 32638 Query 162347 GTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 162406 ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||||| Sbjct 32639 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 32698 Query 162407 GCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 162466 || ||||| || |||| ||||| || || || ||| | ||||| || ||||| ||||| Sbjct 32699 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 32758 Query 162467 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCG 162526 || || | ||| |||||| || |||| | | ||||| ||| | ||||| || Sbjct 32759 ACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 32818 Query 162527 TGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTT 162586 ||| || || ||||| ||||| ||| | ||||| |||||||| || ||||| || || Sbjct 32819 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 32878 Query 162587 CTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCA 162646 ||| ||||| || ||||| | || ||||| | || || ||| | || || || || Sbjct 32879 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 32938 Query 162647 ACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 || ||||| ||| |||| ||||| || || ||||| || | || ||||| ||||||| Sbjct 32939 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 32997 >seq3905 Length=4339 Score = 210 bits (232), Expect = 2e-49 Identities = 295/414 (71%), Gaps = 0/414 (0%) Strand=Plus/Plus Query 161973 CTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAG 162032 || ||| |||||| || ||||| ||||| ||||| |||| || || ||| | ||||| Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 162033 TTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCT 162092 |||||||| || || | || | || || || ||||| || || |||| |||||| Sbjct 1216 TTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTTTGGTCCA 1275 Query 162093 ATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTC 162152 |||||||||||||| ||||| || || || ||| | ||||| || ||||||| || Sbjct 1276 ATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTT 1335 Query 162153 GCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCAT 162212 || || ||||| || || | || ||| ||||| | | ||| | ||||| || ||| Sbjct 1336 GCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCAT 1395 Query 162213 AACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTT 162272 || |||| ||||||| || |||||||||||||| |||||| |||| || | || || Sbjct 1396 AATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTG 1455 Query 162273 CTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCA 162332 ||| |||||||| || | || || |||||||| |||| || ||||| || ||| Sbjct 1456 TTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCA 1515 Query 162333 AACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTC 162386 || || || || ||| | || || | ||||| |||||||| |||||| Sbjct 1516 AATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGTC 1569 >seq3 Length=29132933 Score = 205 bits (226), Expect = 1e-47 Identities = 367/531 (69%), Gaps = 4/531 (1%) Strand=Plus/Plus Query 161716 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTG 161775 |||| || || |||||||| || |||||||| || | || |||| ||| ||| | Sbjct 2931772 GGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCT 2931831 Query 161776 CTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATACCCATGGTCTCG 161835 || | || |||||| | || || |||||||| | ||| |||||||| ||||| | | Sbjct 2931832 CTTTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGG 2931891 Query 161836 CTAGTTCCTATCTTGAGGGT-GCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGAC 161894 ||||||||||| | || ||| ||| |||| | || | ||||| ||||| ||| | Sbjct 2931892 CTAGTTCCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGTTTCTACTCCTGCTAAT 2931950 Query 161895 GCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGC 161954 | | |||||| || || || | ||||||||| || ||||| ||||| || Sbjct 2931951 AGTTTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTCGT 2932009 Query 161955 TGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATT 162014 ||| ||| | | || || ||| |||||| || ||||| |||| |||| |||| Sbjct 2932010 TGGTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATA 2932069 Query 162015 GGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACAATGCT 162074 | || ||| | ||||| |||||||| || || | || | || || || ||||| Sbjct 2932070 AGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCA 2932129 Query 162075 ATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGT 162134 || | ||||||||||| |||||||||||| | ||||| || || || || | ||| Sbjct 2932130 ATAACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCC-TCAGGT 2932188 Query 162135 CAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTG 162194 || || ||||||| || || || ||||| || || || || ||| | ||| | | Sbjct 2932189 CAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCATC 2932248 Query 162195 TTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGA 162245 ||| | ||||| || ||||| |||| ||||||| | |||||||||||| Sbjct 2932249 TTTTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGGA 2932299 >seq69 Length=186703 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 161135 GATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCT 161194 || || || || || |||||| | || | || ||||| ||||||||| ||||||| Sbjct 41239 GACGCTGCTGAGGAAGCAGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGCTCG 41298 Query 161195 TCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGAT 161254 ||||||||||||| || | || || | || ||||||||||||||| ||| | ||| Sbjct 41299 AGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGAT 41358 Query 161255 GATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 ||||||||||||| |||||| || | || |||| || ||||||||| Sbjct 41359 GATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 41409 >seq6 Length=53636577 Score = 102 bits (112), Expect = 9e-17 Identities = 108/141 (77%), Gaps = 6/141 (4%) Strand=Plus/Minus Query 161168 TATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTA 161227 || ||||| ||||||||| ||||||| ||||||||||||| || | || ||| | || Sbjct 10326973 TACTCTTGCCGTGCTGGTTCTTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTCCGTT 10326914 Query 161228 GACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGAT---TGAATCTGGATTCCTTTTG 161284 ||||||||||||||| ||| | |||||||||||||| |||| || || || | Sbjct 10326913 GACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATCGCTGAA---GGGTTTGTTCTC 10326857 Query 161285 ACATGTGTTGCATATCCTACT 161305 || |||| || ||||||||| Sbjct 10326856 ACTTGTGCGGCTTATCCTACT 10326836 >seq9 Length=38354807 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 161168 TATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTA 161227 || ||||| ||||| ||| ||||||| ||| ||||||||| || | || ||||| || Sbjct 36597585 TACTCTTGCCGTGCCGGTTCTTGCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGTACCGTT 36597644 Query 161228 GACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACA 161287 ||||||||||||||| ||| | |||||||||||||||| || || | |||| Sbjct 36597645 GACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTCCTGACT 36597704 Query 161288 TGTGTTGCATATCCTACT 161305 |||| || ||||||||| Sbjct 36597705 TGTGCGGCTTATCCTACT 36597722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559429334191200