Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq10676 587 9e-163 seq3905 205 1e-47 seq3 190 3e-43 seq3442 91.5 2e-13 seq69 86.0 8e-12 >seq10676 Length=153368 Score = 587 bits (650), Expect = 9e-163 Identities = 727/995 (73%), Gaps = 0/995 (0%) Strand=Plus/Minus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 ||||| | ||| ||||| ||| | ||||| || || | || ||||| || || || Sbjct 1326 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1267 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 181100 |||||||| || | ||| | |||||| | ||| || |||| ||| | |||||||| Sbjct 1266 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1207 Query 181101 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 181160 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 1206 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1147 Query 181161 ATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 181220 || || || ||||| || |||| |||| || |||||| | || || ||||| ||| Sbjct 1146 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 1087 Query 181221 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTC 181280 |||||||| ||||| ||||||| ||||| || ||||||||||||| |||| | || Sbjct 1086 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1027 Query 181281 TTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCGC 181340 | ||||| | | || | | || ||||| ||||| |||||||| || ||| Sbjct 1026 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 967 Query 181341 TTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCT 181400 | |||||||| || ||||| ||||||||| || ||||| || ||||| || ||||| Sbjct 966 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 907 Query 181401 GTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATC 181460 || ||| | |||| || | |||||||| ||| ||||| | ||||| || || ||| Sbjct 906 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 847 Query 181461 TCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCC 181520 |||||||| ||||||| ||| |||| ||||| || |||||||||||||| ||||| || Sbjct 846 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 787 Query 181521 TTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGT 181580 || |||||||| ||||| || |||||||| || || || || || ||||| ||||| ||| Sbjct 786 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 727 Query 181581 TCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGT 181640 |||||||| || ||| | || | || || || |||| ||| || || | || Sbjct 726 TCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGG 667 Query 181641 TACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGT 181700 |||| ||||| ||||||||||| || |||||||| || || || |||||||| ||||| Sbjct 666 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 607 Query 181701 CGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCA 181760 || |||||||||||||||||| |||||||| || ||||| | || |||||| | || Sbjct 606 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 547 Query 181761 GCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAAC 181820 || ||||| ||||| || || ||||| || || | || | || || ||||| || ||| Sbjct 546 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 487 Query 181821 CTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACACC 181880 || ||||| ||||| |||||||| || | | || | ||||||||||| | || || Sbjct 486 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 427 Query 181881 TGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCG 181940 ||||| || | | |||||||| || || |||||||| ||||| || || || || Sbjct 426 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 367 Query 181941 CACAACTTCCCGCTTGATCTTGCAGCAGCTGAGTC 181975 ||||||||||| || || || || || | |||||| Sbjct 366 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 332 Score = 508 bits (562), Expect = 7e-139 Identities = 720/1007 (71%), Gaps = 8/1007 (1%) Strand=Plus/Plus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | |||| ||||| || ||||| ||||||||||| || | || Sbjct 31990 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32049 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 32050 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32109 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 182550 |||| || || || | ||| ||||||| | |||||| || ||| | || || || | Sbjct 32110 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 32169 Query 182551 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 182610 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 32170 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 32229 Query 182611 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 182670 | || |||| || ||||| ||| | || || || ||| ||| || |||||||||| Sbjct 32230 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 32289 Query 182671 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGA 182729 |||| ||||| | || ||||| ||| | | ||||||||||||||||| ||| || | Sbjct 32290 GTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAA 32348 Query 182730 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTC 182789 | ||||||| ||||| || || || |||||||| |||||||| || || ||| || Sbjct 32349 TTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTT 32408 Query 182790 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 182849 || || ||||| | || || || |||||| || ||||| |||||||| ||||| Sbjct 32409 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 32468 Query 182850 ATCTTCAGGT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTC 182906 || || | | |||| || |||| ||||||| || || |||||| | ||||| || Sbjct 32469 ATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTT 32525 Query 182907 CATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTC 182966 |||||||||||||| |||||| ||||||| | || ||| | | ||||| ||||||| Sbjct 32526 CATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCT 32585 Query 182967 ACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGAT 183026 || ||||| ||||| || | ||||||||| || ||||| ||||| || || | Sbjct 32586 ACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAAC 32645 Query 183027 TCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATC 183086 | ||||| | || || || ||||| ||||| || || || || ||||||||||||||| Sbjct 32646 CCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATC 32705 Query 183087 TTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTC 183146 || |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || Sbjct 32706 TTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTA 32765 Query 183147 ATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTAT 183206 | ||| | ||| | | || |||| | | || || ||| | || || ||||| ||| Sbjct 32766 ACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTAT 32825 Query 183207 GATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACA 183266 || || || || || || | ||||| |||||||| || || ||||| ||||| || Sbjct 32826 GACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACT 32885 Query 183267 AAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACAT 183326 || || || ||| | || ||||| | || |||||| |||| || ||||| || ||| Sbjct 32886 AAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCAT 32945 Query 183327 GAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 |||||| | || |||||||| || |||||||| | || ||||| || Sbjct 32946 GAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 32992 >seq3905 Length=4339 Score = 205 bits (226), Expect = 1e-47 Identities = 272/372 (73%), Gaps = 8/372 (2%) Strand=Plus/Plus Query 182646 CTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAA 182705 || ||| ||| || |||||||||||||| ||||| | || ||||| ||| | | ||| Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 182706 TTTGAACTTGCTCG-CCTGATTGGAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCC 182764 |||||||||||||| ||| || | | ||||||| ||||| || || || | |||||| Sbjct 1216 TTTGAACTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTTTGGTCC 1274 Query 182765 TATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTT 182824 |||||||| || || ||| || || || ||||| | || || || |||||| || Sbjct 1275 AATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTT 1334 Query 182825 CGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGT---TCCTGTTGTTCCTTCAGGGTTT 182881 ||||| |||||||| |||| || || | | |||| || |||| ||||||| Sbjct 1335 TGCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT 1392 Query 182882 CCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGC 182941 || || |||| | | ||||| || |||||||||||||| |||||| ||||||| | || Sbjct 1393 -CATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGC 1451 Query 182942 ACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACA 183001 ||| | | ||||| ||||||| || ||||| ||||| || | ||||||||| || Sbjct 1452 TCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGG 1511 Query 183002 GGCAAACACATT 183013 ||||| ||||| Sbjct 1512 TGCAAATACATT 1523 >seq3 Length=29132933 Score = 190 bits (210), Expect = 3e-43 Identities = 366/532 (69%), Gaps = 6/532 (1%) Strand=Plus/Plus Query 182389 GGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTG 182448 |||| |||||||| ||||| ||||||||||| || | || |||| ||| ||| | Sbjct 2931772 GGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCT 2931831 Query 182449 CCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTG 182508 | | || |||||| | || || ||| ||||||| || ||||| || || || | | Sbjct 2931832 CTTTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGG 2931891 Query 182509 CTTCTTCCTATCTTGAAGGT-GCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGAT 182567 || ||||||| | |||||| || |||| | || | || || || || |||||| || Sbjct 2931892 CTAGTTCCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGTTTCTACTCCTGCTAAT 2931950 Query 182568 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGG 182627 | | |||||| || || | || ||||||||| | || || |||| || Sbjct 2931951 AGTTTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTCGT 2932009 Query 182628 TGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATT 182687 ||||| ||| | | || || ||| ||| || ||||||||| |||| |||| | || Sbjct 2932010 TGGTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATA 2932069 Query 182688 GGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGAATCAGACCTTACAATGC 182746 |||| ||| | | ||||||||||||||||| ||| || | | ||||||| ||||| Sbjct 2932070 AGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAATTGCGACCTTATAATGC 2932128 Query 182747 GATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGG 182806 || | || |||||||| |||||||| || | ||| || || || ||||| | || Sbjct 2932129 AATAACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCC-TCAGG 2932187 Query 182807 ACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTT 182866 || || |||||| || || || |||||||| ||||| || || ||||| | | Sbjct 2932188 TCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCAT 2932247 Query 182867 GTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGA 182918 || | || || || || || |||| | | ||||| | |||||||||||| Sbjct 2932248 CTTTTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGGA 2932299 >seq3442 Length=4740 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 181653 CAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTC 181712 |||||| |||| || |||||||| || || || |||||||| ||||| || ||||||||| Sbjct 4279 CAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTC 4338 Query 181713 CAATATGCTTCATTCAACAACTCACGTT 181740 ||||||||| |||||||| || |||| Sbjct 4339 CAATATGCTAGTTTCAACAATTCTCGTT 4366 >seq69 Length=186703 Score = 86.0 bits (94), Expect = 8e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 179483 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 179542 |||| ||||||||||| |||||||| | || | ||||||||| ||||||||| ||| Sbjct 41234 TCCTCGACGCTGCTGAGGAAGCAGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTT 41293 Query 179543 GTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAAGCGATCAATCGTTTT 179602 | || ||||| |||||| | | | |||||||||||| || || || || Sbjct 41294 GCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 41353 Query 179603 TGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTTGCGTATCTTATCCTACTAGTG 179662 | ||||| || || || | ||||| |||| ||||| | ||||||||||| || Sbjct 41354 TCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTG 41413 Query 179663 AT 179664 || Sbjct 41414 AT 41415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614535579281280