Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq10676 542 4e-149 seq3905 217 2e-51 seq3 170 3e-37 >seq10676 Length=153368 Score = 542 bits (600), Expect = 4e-149 Identities = 701/968 (72%), Gaps = 0/968 (0%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| | || ||||| |||||| | ||||||||||| || || |||||||| Sbjct 1299 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCAACT 1240 Query 174555 GTATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAA 174614 ||| |||||||| ||| | | |||||| ||||| || || || || || |||||| Sbjct 1239 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1180 Query 174615 CCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGT 174674 || || |||| || || | || |||||||| || || || ||||| || |||||| | Sbjct 1179 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACT 1120 Query 174675 TCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGG 174734 || || || ||| | || || || || ||||||||||| || | | || |||||| Sbjct 1119 TCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 1060 Query 174735 CTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCC 174794 || |||||||||||||||| ||||| |||| | ||||| | ||||| | Sbjct 1059 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1000 Query 174795 TATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTA 174854 |||||||| |||||||||||||| || ||| | |||||| | |||||||| ||| Sbjct 999 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 940 Query 174855 GCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAA 174914 ||||| || || || |||||||| ||| | || || ||| | |||| || | |||||| Sbjct 939 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 880 Query 174915 GGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTC 174974 || || || || | ||||| | || |||||||| || ||||||| ||| | || Sbjct 879 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTA 820 Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034 ||||| || || || ||||| | |||||||| || |||||||| || || || ||||| Sbjct 819 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 760 Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGT 175094 ||||| || || | || || ||||||||||| | || || ||| | || | Sbjct 759 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGG 700 Query 175095 GAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACC 175154 || || || |||| ||| || || | || |||| ||||| ||||||||||| || Sbjct 699 GAAACCACAGAAAATGAATCTGCTAATGAAGGGTACAGATTCGGTCAAGAAGAAGAAACT 640 Query 175155 TATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 175214 || ||||| || || || || || || || || || |||||||||||||| ||| ||| Sbjct 639 TACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTC 580 Query 175215 AACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTC 175274 ||||| || || || | || ||||||||||| || ||||| || || ||||| ||||| Sbjct 579 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 520 Query 175275 ACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCT 175334 || || | ||| || || ||||| |||||||| ||||||||||| |||||||| || Sbjct 519 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 460 Query 175335 GTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGT 175394 || | || | ||||| | || | || || ||||| ||| || ||||| | ||| Sbjct 459 GTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 400 Query 175395 CTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAGCA 175454 ||||| |||||||| |||||||| | ||||| ||||||||||| ||||| | || || Sbjct 399 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 340 Query 175455 GCTGAGTC 175462 | |||||| Sbjct 339 GTTGAGTC 332 Score = 475 bits (526), Expect = 5e-129 Identities = 710/1008 (70%), Gaps = 0/1008 (0%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | || | ||| | || |||||||| | Sbjct 31982 TGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCT 32041 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||| ||| | || | || || ||| | || || ||||| ||||| Sbjct 32042 ATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGT 32101 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || ||||| || ||||| | ||| ||||||| | || ||| || ||| | || Sbjct 32102 AACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAAC 32161 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 || || || || ||||||||| || | | | |||||| | | |||| |||||||| Sbjct 32162 CGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCC 32221 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 |||| | || || || || || ||| ||| | || || || ||| | |||||||| Sbjct 32222 TGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGC 32281 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212 |||||||||||| ||||| | || || || ||| | ||||| |||||||| || || Sbjct 32282 TCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATC 32341 Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272 || | || || || || || || |||||| |||||| || ||||| ||||| Sbjct 32342 TGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTC 32401 Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 ||| ||||| | || ||||||||||||||| ||||||||||| || |||||||| Sbjct 32402 TGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 32461 Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCC 176392 || || || ||| ||||| | | ||| | || || || || || |||||| ||||||| Sbjct 32462 AGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCC 32521 Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 || |||||||||||||| |||||| |||| || | || || ||| || || ||||| Sbjct 32522 ATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGG 32581 Query 176453 CGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTT 176512 | |||||| |||||||| ||| ||||||||| || || || ||| ||| || Sbjct 32582 TGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTT 32641 Query 176513 CGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCA 176572 | | || || | ||||| || ||||| ||||| || || |||||||| ||||| || Sbjct 32642 TAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACA 32701 Query 176573 AATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632 |||||| |||||||| ||| ||||| |||||| | || ||||||||||| ||||| || Sbjct 32702 AATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 32761 Query 176633 TGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGC 176692 || | ||| | ||| | | |||| | | || || ||| | || || ||||| Sbjct 32762 AGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGC 32821 Query 176693 TTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTA 176752 ||||| || || ||| || || | ||||| |||||||| || ||||| |||||||| Sbjct 32822 CTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTA 32881 Query 176753 CACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACC 176812 || || || || ||| | |||||||| | | || |||||||| || ||||| || Sbjct 32882 TACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCC 32941 Query 176813 ACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| || ||||||| || || |||||||| | || ||||| Sbjct 32942 TCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 32989 >seq3905 Length=4339 Score = 217 bits (240), Expect = 2e-51 Identities = 260/353 (74%), Gaps = 0/353 (0%) Strand=Plus/Plus Query 176136 CTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAG 176195 || ||| | |||||||||||||||||||| ||||| | || || || ||| | ||||| Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 176196 TTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCT 176255 |||||||| || || || | || || || || || || |||||| |||||| Sbjct 1216 TTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTTTGGTCCA 1275 Query 176256 ATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTT 176315 || ||||| ||||| ||| ||||| | || ||||||||||||||| ||||||||| Sbjct 1276 ATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTT 1335 Query 176316 GCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCAC 176375 || || |||||||| || | || ||| ||||| | | ||| | || || || || Sbjct 1336 GCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCAT 1395 Query 176376 AACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTA 176435 || |||| | ||||||| || |||||||||||||| |||||| |||| || | || || Sbjct 1396 AATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTG 1455 Query 176436 CTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGA 176488 ||| || || ||||| | |||||| |||||||| ||| ||||||||| || Sbjct 1456 TTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGA 1508 >seq3 Length=29132933 Score = 170 bits (188), Expect = 3e-37 Identities = 375/557 (67%), Gaps = 4/557 (1%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 || |||| | | |||||| | | || || | ||| | ||| | || |||||||| | Sbjct 2931746 TGGTATTATTAATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCT 2931805 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||| ||| | | | || || ||| | || || ||||||||||| Sbjct 2931806 ATTGCTCTTTCCTTGTGCCTATTTCTCTTTGGGGGGTTGGTTCACAGGTACAACTTTTGT 2931865 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGT-GCTAACTTTCTCA 176031 || ||||| || ||||| | ||| ||||||| | || ||| || |||| | | Sbjct 2931866 AACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAGTCTTT-TAA 2931924 Query 176032 CAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTC 176091 | | || || || ||||||||| || | | |||||| || || | || ||||| Sbjct 2931925 CCGATGCAGTTTCTACTCCTGCTAATAGTTTAACGCATTCT-TTGTTATTATTGTGGGTC 2931983 Query 176092 CTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTG 176151 ||||| | || || || || || ||| ||| | | || || ||| ||||||| Sbjct 2931984 CTGAAGCACAAGGAGATTTTAGTCGTTGGTGTCAATTAGACGGTCTGTGGGGTTTTGTTG 2932043 Query 176152 CTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGAC 176211 |||||||| |||| |||| | || | || ||| | ||||| |||||||| || || Sbjct 2932044 CTCTCCACAGTGCTTTCGAATTAATAAGTTTTATGTTACGTCAATTTGAACTTGCTCGAT 2932103 Query 176212 TCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCA 176271 || | || || || || || || ||||| |||||| || ||||| ||| | Sbjct 2932104 CTGTTCAATTGCGACCTTATAATGCAATAACATTCTCTGGTCCAATTGCTGTTTTTATTT 2932163 Query 176272 GTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTG 176331 ||| ||||| | || || | |||||||||| ||||||||||| || ||||||| Sbjct 2932164 CTGTCTTTCTAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTG 2932222 Query 176332 TGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACC 176391 | || || || ||| | ||| | | ||| | || || || || || |||| | |||||| Sbjct 2932223 TAGCGGCTATATTTCGGTTCATCATCTTTTTCCAAGGGTTTCATAATTGGAAATTGAACC 2932282 Query 176392 CCTTCCATATGATGGGA 176408 | | |||||||||||| Sbjct 2932283 CTCTTCATATGATGGGA 2932299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729832190894880