Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq10676 605 3e-168 seq3905 233 2e-56 seq3 210 3e-49 seq813 86.0 8e-12 >seq10676 Length=153368 Score = 605 bits (670), Expect = 3e-168 Identities = 723/979 (74%), Gaps = 2/979 (0%) Strand=Plus/Minus Query 178888 AATCGTTTGTATGTTGGTTGGTTCGGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACT 178947 || ||| | || |||| ||||| ||||| ||||||||||||| || | | |||||| Sbjct 1299 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCAACT 1240 Query 178948 ATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAA 179007 | ||| || | || ||| | || || ||||| || |||||||| || || |||||| Sbjct 1239 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1180 Query 179008 CCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGT 179067 || || |||| || || | || |||||||| || || || ||||| || | || | | Sbjct 1179 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACT 1120 Query 179068 TCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGG 179127 || || |||||| | || || || || ||||||||||| ||||| | ||||| ||| Sbjct 1119 TCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 1060 Query 179128 CTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCC 179187 || || ||||||||||||| |||| | || | ||||| | | || | | Sbjct 1059 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1000 Query 179188 TATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 179247 |||||||| ||||||||||||||| || |||||| ||||||||||| ||||| |||| Sbjct 999 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 940 Query 179248 GCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAA 179307 ||||| || || || || || ||||| | ||| || ||| | |||| || | |||||| Sbjct 939 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 880 Query 179308 GGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 179367 || ||| ||||||| ||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 879 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTA 820 Query 179368 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 179427 ||||| || || |||||||| ||||||||||| || || ||| | ||||| ||||| ||| Sbjct 819 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 760 Query 179428 TTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-G 179486 ||||| || || || || ||||||||| || | | || ||||| | | ||| || | Sbjct 759 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTC-TAGTTTGATCAG 701 Query 179487 TGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC 179546 ||||| || || | || || || | || || | ||||| ||||||||||| || Sbjct 700 GGAAACCACAGAAAATGAATCTGCTAATGAAGGGTACAGATTCGGTCAAGAAGAAGAAAC 641 Query 179547 CTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTT 179606 || ||||| || || || || || || || || || ||||||||||||||||| || Sbjct 640 TTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 581 Query 179607 TAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTT 179666 ||||| || || ||||| || |||||| | || || |||||||| || || || ||||| Sbjct 580 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 521 Query 179667 CACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTC 179726 |||||| | || | || ||||| |||||||| || |||||||| |||||||| || Sbjct 520 TACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 461 Query 179727 CATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGG 179786 | |||| ||||||||||||| |||| || ||||| || | | |||||||| Sbjct 460 AGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 401 Query 179787 TTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGC 179846 | |||||||||||||||||||| ||||| || ||||||||||| || ||||| ||||| Sbjct 400 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 341 Query 179847 TGCTGAGTCTACACCTGTA 179865 || ||||||| || || || Sbjct 340 TGTTGAGTCTCCATCTATA 322 Score = 515 bits (570), Expect = 5e-141 Identities = 702/980 (72%), Gaps = 0/980 (0%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 |||||||| || ||||| || |||||||| ||| | || |||| ||| ||| | || Sbjct 32010 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 32069 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| | || || ||| | ||||| || ||||| || || || | ||| Sbjct 32070 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 32129 Query 180171 TCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCT 180230 ||||||| | |||||| || ||| | || || || || || || |||||| | | Sbjct 32130 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGT 32189 Query 180231 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGG 180290 | | |||||| | | |||| ||||||||||| | || || |||| || ||| Sbjct 32190 TTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 32249 Query 180291 TGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGA 180350 || ||| | || || || ||| ||| || |||||||||||||| ||||| |||| || Sbjct 32250 TGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGT 32309 Query 180351 TTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATT 180410 |||||| |||| || |||||||| || || | || | || ||||| ||||| || Sbjct 32310 TTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATC 32369 Query 180411 GCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAG 180470 |||||||||||||| || ||||| ||||| || ||||| || || ||||| ||||| Sbjct 32370 GCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAA 32429 Query 180471 TCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTT 180530 || ||||||||||||| || |||||| ||||| || || ||| ||||| | |||||| Sbjct 32430 TCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTT 32489 Query 180531 CTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATA 180590 | || || || || || ||||| | ||||| || |||||||||||||| |||||| || Sbjct 32490 TTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTA 32549 Query 180591 CTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAA 180650 || || | || || ||| || || ||||| | ||||| || || || | | |||| Sbjct 32550 CTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAA 32609 Query 180651 GATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTAC 180710 ||||| || ||||| || || || ||| | |||| |||| || |||||||| Sbjct 32610 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTAT 32669 Query 180711 TCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAG 180770 || |||||||| || |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 32670 TCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAA 32729 Query 180771 CGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT 180830 || ||| | ||||| || ||||| ||||| || || | ||| |||||| || || Sbjct 32730 CGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTT 32789 Query 180831 GGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGA 180890 || | | ||||| ||| | ||||| ||||| || || ||||| || || ||| | Sbjct 32790 GGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGT 32849 Query 180891 GCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGA 180950 ||||| |||||||| || || ||||| ||||| || || || || || || || ||||| Sbjct 32850 GCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGT 32909 Query 180951 CTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAA 181010 | || || ||| |||| || ||||| || || |||||| | || |||||||| || Sbjct 32910 ATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAG 32969 Query 181011 GTTCTACCAAGAGGTAACGC 181030 ||||||||| | || ||||| Sbjct 32970 GTTCTACCACGTGGAAACGC 32989 >seq3905 Length=4339 Score = 233 bits (258), Expect = 2e-56 Identities = 300/414 (72%), Gaps = 0/414 (0%) Strand=Plus/Plus Query 180306 CTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAG 180365 || ||| ||| || |||||||||||||| ||||| |||| || |||||| |||| || Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 180366 TTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCT 180425 |||||||| || || | || | || ||||| ||||| || ||||||| |||||| Sbjct 1216 TTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTTTGGTCCA 1275 Query 180426 ATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTT 180485 || ||||| ||||| || ||||| || || ||||| ||||| || ||||||||||| Sbjct 1276 ATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTT 1335 Query 180486 GCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCAC 180545 || || |||||| ||||| | || ||| ||||| | |||||| | || || || || Sbjct 1336 GCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCAT 1395 Query 180546 AACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTG 180605 || |||| | ||||| || |||||||||||||| |||||| |||| || | || || Sbjct 1396 AATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTG 1455 Query 180606 CTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCA 180665 ||| || || ||||| | ||||| || || || | | ||||||||| || ||| Sbjct 1456 TTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCA 1515 Query 180666 AACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTC 180719 || || || || ||| | ||| |||| || |||||||| || |||||| Sbjct 1516 AATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGTC 1569 >seq3 Length=29132933 Score = 210 bits (232), Expect = 3e-49 Identities = 367/529 (69%), Gaps = 4/529 (1%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 ||||||||||| ||||| || |||||||| ||| | || |||| ||| ||| | | Sbjct 2931774 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCTCT 2931833 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| | || || ||| ||||||| || ||||| || || || | ||| Sbjct 2931834 TTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGGCT 2931893 Query 180171 TCTTCCTATCTTGAAGGT-GCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGC 180229 ||||||| | |||||| || |||| | || | || || || || |||||| | Sbjct 2931894 AGTTCCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGTTTCTACTCCTGCTAATAG 2931952 Query 180230 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTG 180289 | | |||||| || || | || ||||||||| | || || |||| || || Sbjct 2931953 TTTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTCGTTG 2932011 Query 180290 GTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGG 180349 ||| ||| | | || || ||| ||| || ||||||||| |||| |||| |||| | Sbjct 2932012 GTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATAAG 2932071 Query 180350 ATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTAT 180409 |||||| |||| || |||||||| || || | || | || ||||| ||||| || Sbjct 2932072 TTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAAT 2932131 Query 180410 TGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCA 180469 ||||||||||||| || ||||| ||| | || ||||| || || || | ||||| Sbjct 2932132 AACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCCTC-AGGTCA 2932190 Query 180470 GTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTT 180529 || ||||||||||||| || |||||| ||||| || || ||| | ||| | |||| Sbjct 2932191 ATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCATCTT 2932250 Query 180530 TCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGA 180578 | | || || || || || |||| | ||||| | |||||||||||| Sbjct 2932251 TTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGGA 2932299 >seq813 Length=20179 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 179794 ATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAG 179853 ||||||||||||||||| ||||| || ||||||||||| || ||||| ||||||| |||| Sbjct 10706 ATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 10647 Query 179854 TCTACACCTGTA 179865 ||| || || || Sbjct 10646 TCTCCATCTATA 10635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610248151514880