Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8 136 5e-27 seq6 104 3e-17 >seq8 Length=29681327 Score = 136 bits (150), Expect = 5e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||| | ||||||| ||| | || | |||||| |||| |||||| Sbjct 8204240 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 8204181 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||| ||| ||| || |||||| |||| || || || || ||| Sbjct 8204180 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 8204121 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||||||||| || || |||| || | ||||| ||||||||| |||||||| Sbjct 8204120 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 8204061 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| ||||||||||| ||||| Sbjct 8204060 TCCCTCAATGCTATCATCCTTCATG 8204036 >seq6 Length=53636577 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 23786774 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACC 23786715 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||||| ||||| || ||| || |||||||| || || || || || || Sbjct 23786714 ATTAGATTCTCCATTAGTGCCACGGATGTAACTTCCAGAAGCACGGATGTTGTGAACTGA 23786655 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | |||||| || || || |||| || | ||||| ||||||||| |||||||| Sbjct 23786654 AACACCTATACCCCCAGCTGATTTACTAATAACCGCACACTCTTTCAATGTATCATATAT 23786595 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || ||||||||||| ||||| | ||||| ||||| Sbjct 23786594 TCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 23786553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686817132020640