Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 2e-11 >seq2 Length=43799612 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 || || || ||| ||| || ||||| || | ||| | | ||||||| | || || Sbjct 41543584 CGGCGGATTATAATGTCGGCTTGGAATCCTTCTGACCTTAAGCTGATGGCGCTTCCTCCA 41543525 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 || || |||| ||||||||||||| ||||| || || || |||||| ||||||| Sbjct 41543524 TGCCACATGTTTGCTCAGTTTTACGTTGCAAATGGAGAGCTCTCGTGTCAAATGTATCAG 41543465 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 | |||| ||| ||||| || || || || |||||||| || Sbjct 41543464 CGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGC 41543424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397404285509380