Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 2e-11 >seq4 Length=50002108 Score = 86.0 bits (94), Expect = 2e-11 Identities = 310/477 (65%), Gaps = 20/477 (4%) Strand=Plus/Plus Query 443406 GAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465 || ||| | ||| ||||| | || | |||||||| || | |||||| |||||| Sbjct 15358684 GAGCGCCACTTCATCAAACACGTCCTAGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTG 15358743 Query 443466 GAGAATCTGGTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTC 443522 ||||| || | | || ||| | ||| | || | ||||||| || |||| Sbjct 15358744 GAGAACCTCGCCTCCCGGTTCATGTCCGACGTCCAGGTCT---CCGAGGCGCGTGCCTTC 15358800 Query 443523 TACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAG 443582 |||| ||||| ||| || |||||||| ||| | ||| | || || | || || | Sbjct 15358801 TACGGCTTCCAGATCGCGATTGAGAACATCCACTCAGAGATGTATAGCCTCCTGCTCGAC 15358860 Query 443583 ACACTAATTCCGAACGAAGACGAACAGCGGT-CCATCTTCTCATCGT--TCATGACCACG 443639 || ||| || || || || | || || |||||| || | || ||||| Sbjct 15358861 AC-CTACATC--AAGGATAACAAGGAGAGGGACCATCTCTTCCGGGCCATCGAGACCATC 15358917 Query 443640 CCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAGC 443699 || || || | | ||| | | ||||| | ||||| |||| || |||||| Sbjct 15358918 CCCTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGACGGA-----TCTCAGA 15358972 Query 443700 --TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCT 443757 |||| ||| | | ||||| || || || ||||| | || || ||| |||| Sbjct 15358973 CTTTCGCGGAGAGGATCGTCGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCCGGAAGCT 15359032 Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817 | || || ||||||||| | || |||||||| || |||| ||||||||||| ||| Sbjct 15359033 TCTGC-TCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAAC 15359091 Query 443818 GAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 || |||||| | |||||||| | || ||||| |||||||| || |||| ||| Sbjct 15359092 GAGCTGATCTCGAGAGACGAGGGGCTTCACTGCGATTTCGCCTGCCTGATCTATACC 15359148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588118737474820