Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 seq8 122 1e-22 seq6 118 1e-21 seq4 102 1e-16 seq7 96.9 4e-15 >seq1 Length=26309735 Score = 138 bits (152), Expect = 1e-27 Identities = 301/446 (67%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | ||| |||||| ||||| |||||| | | || || || Sbjct 2345850 CGGTCAAAACGGCCTGGTCTAAGCAGGGCGGAGTCAAGAATATCCGCTCTGTTGGTTGCA 2345909 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | | ||||| | | ||||| ||||||||||| || | | || ||| Sbjct 2345910 GCAACCACGATCACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGGTTA 2345969 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCA 11627 | || ||||||||||| ||||| || | | | |||| | | ||| | || | Sbjct 2345970 AGCGTCTGTTCTCTCTCGTCATTACCT--CCACCGATTCCAGTTCCTCTCTGCCTACCGA 2346027 Query 11628 CCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 11687 | |||||||||||||| | |||||||| || || ||| || ||| ||| || | Sbjct 2346028 CGGCATCAATCTCATCCACAAAGACAATGCACGGAGCATTCTCCTTGGCCTTTTTGAAAA 2346087 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747 |||| || ||||| ||||| ||||| ||||||||||| || || | | | ||| Sbjct 2346088 GATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACGAACTCAGAACCTGAG- 2346146 Query 11748 ACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 | || | ||| || ||| | |||||| ||||||||| || | || || ||||| Sbjct 2346147 ATTGAAAAGAAAGGCACACCAGCTTCACCAGCGATGGCTTTTGCTAACAGTGTTTTTCCA 2346206 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATAT 11866 ||||| || ||| |||| || | ||| |||||| | || ||| || | Sbjct 2346207 GTACCGGGAGGACCAACGAGGAGAACACCTTTCGGGATCCTCGCGCCAACAGCAGTGAAC 2346266 Query 11867 CTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||| || | ||||||||| ||||| Sbjct 2346267 CTCTCAGGCTTCTTGAGAAACTCCAC 2346292 >seq8 Length=29681327 Score = 122 bits (134), Expect = 1e-22 Identities = 295/444 (66%), Gaps = 2/444 (0%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||| || ||||| | || | ||| ||||| ||||| | | || || || Sbjct 964089 CGGTCAAACCGCCCCGGTCTCAGCAACGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 964148 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || | | |||||| Sbjct 964149 GCAACCACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTA 964208 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGG-CATACCACCAGCACTGCGTTGCTTGCCCAC 11628 | || || |||||||||||||| || | | | |||| | | ||| | || || Sbjct 964209 AGCGTCTGCTCTCTCTCATCATTCCCTCCACCGATC-CCAGTCCCTCTCTGCCTACCAAC 964267 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688 ||||| ||||| || | ||||||||| || || ||| || ||| ||| || || Sbjct 964268 AGCATCTATCTCGTCCACGAAGACAATGCACGGAGCATTCTCCTTGGCCTTTTTGAAAAG 964327 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748 ||| || ||||| ||||| ||||| ||||||||||| ||||| | | ||||| Sbjct 964328 ATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACAAACTCAGAACCAGAGAT 964387 Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 || ||| || ||| | |||||| || ||||| || | || || || || || Sbjct 964388 GGAGAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGTTTTACCAGT 964447 Query 11809 ACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCT 11868 ||| || ||| |||| ||| | ||| |||||| |||||| || | || Sbjct 964448 ACCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTGAACCT 964507 Query 11869 CTCGGGTTGCTTGAGAAAATCCAC 11892 ||| || | ||| ||||| ||||| Sbjct 964508 CTCAGGCTTCTTCAGAAACTCCAC 964531 >seq6 Length=53636577 Score = 118 bits (130), Expect = 1e-21 Identities = 280/422 (66%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||| || || |||| ||| | || ||||| | | ||||| Sbjct 45675222 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 45675281 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | || || | || ||||||||||||||||| || Sbjct 45675282 CCATCCATCTCAGTTAGCAGCTGGTTCAAAGTCTGTTCTCTCTCATCATTCCCT------ 45675335 Query 11603 CCACC-AGCACTG-----CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 ||||| | ||| | |||| | || || ||||| |||||||||| |||||||| Sbjct 45675336 CCACCGATTCCTGTCCCTCTTTGCCTACCAACAGCATCGATCTCATCAACAAAGACAATG 45675395 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || || ||| | | || ||||| || ||||| |||||| ||||| Sbjct 45675396 CAAGGAGCGTTCTCCTTGGCCTTCTTGAAAAGATCACGGACCCTCGAGGCACCAACACCG 45675455 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 ||||||||||| ||||| | | | ||| || ||| || ||| | |||||| Sbjct 45675456 ACAAACATCTCAACAAACTCAGACCCGGAGATGGAGAAGAACGGCACACCAGCTTCACCG 45675515 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 ||||| ||| || || || ||||| || ||||| || ||| || || | ||| Sbjct 45675516 GCGATAGCTTTCGCCAGCAGCGTCTTCCCAGTACCAGGAGGACCGATAAGCAGAACACCT 45675575 Query 11837 CGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATC 11896 |||||| |||||| || | ||||| || | ||| ||||| ||||| | | Sbjct 45675576 TTAGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACC 45675635 Query 11897 TC 11898 || Sbjct 45675636 TC 45675637 Score = 118 bits (130), Expect = 1e-21 Identities = 280/422 (66%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||| || || |||| ||| | || ||||| | | ||||| Sbjct 45684660 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 45684719 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | || || | || ||||||||||||||||| || Sbjct 45684720 CCATCCATCTCAGTTAGCAGCTGGTTCAAAGTCTGTTCTCTCTCATCATTCCCT------ 45684773 Query 11603 CCACC-AGCACTG-----CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 ||||| | ||| | |||| | || || ||||| |||||||||| |||||||| Sbjct 45684774 CCACCGATTCCTGTCCCTCTTTGCCTACCAACAGCATCGATCTCATCAACAAAGACAATG 45684833 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || || ||| | | || ||||| || ||||| |||||| ||||| Sbjct 45684834 CAAGGAGCGTTCTCCTTGGCCTTCTTGAAAAGATCACGGACCCTCGAGGCACCAACACCG 45684893 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 ||||||||||| ||||| | | | ||| || ||| || ||| | |||||| Sbjct 45684894 ACAAACATCTCAACAAACTCAGACCCGGAGATGGAGAAGAACGGCACACCAGCTTCACCG 45684953 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 ||||| ||| || || || ||||| || ||||| || ||| || || | ||| Sbjct 45684954 GCGATAGCTTTCGCCAGCAGCGTCTTCCCAGTACCAGGAGGACCGATAAGCAGAACACCT 45685013 Query 11837 CGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATC 11896 |||||| |||||| || | ||||| || | ||| ||||| ||||| | | Sbjct 45685014 TTAGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACC 45685073 Query 11897 TC 11898 || Sbjct 45685074 TC 45685075 >seq4 Length=50002108 Score = 102 bits (112), Expect = 1e-16 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| |||| || || || || || |||||| ||||| |||||||| || Sbjct 15359121 GTGAAGCCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 15359062 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | |||||| |||||||||||||| || ||||| || Sbjct 15359061 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 15359002 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | | | || ||||| | |||| | | || | ||| ||||| || Sbjct 15359001 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 15358945 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||||| ||||||||| | | || || | || | |||||| Sbjct 15358944 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGC 15358903 >seq7 Length=27187321 Score = 96.9 bits (106), Expect = 4e-15 Identities = 212/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || | | |||||||| || || || ||||||||||| || | Sbjct 11257574 AACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--C 11257631 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| ||||| | | ||| | ||||| |||||||||||||| || || ||||| | Sbjct 11257632 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCGATAAAAACAATGC 11257691 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || || | || | || || | ||| | |||||| ||||||||||| | Sbjct 11257692 AAGGCGCCTTGGCCTTAGCCTTCTCGAACAAATCCCTAACCCTAGACGCACCCACACCGA 11257751 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 | || | ||| ||||| | | || | ||| || ||| || ||| | ||| || | Sbjct 11257752 CGAAAAGCTCAACAAACTCAGAAGCCGCGCAGGAGAAGAACGGCACACCGGCTTCTCCAG 11257811 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | | |||| || | || ||||| || || || || |||| |||| || ||| Sbjct 11257812 CAACAGCTCTAGCTAACAGAGTCTTACCAGTCCCGGGGGGACCCACGAGGAGACACCCTT 11257871 Query 11838 GGGGGATCTTGGCACC 11853 ||| |||||||| || Sbjct 11257872 TGGGAATCTTGGCGCC 11257887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627948189129600