Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 129 7e-25 seq8 89.7 6e-13 >seq4 Length=50002108 Score = 129 bits (142), Expect = 7e-25 Identities = 162/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || |||||||| | ||||| || || || |||||| |||||| |||||||| || Sbjct 15359121 GTGAAGCCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 15359062 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| |||| || || || |||||||||||||| ||||| || Sbjct 15359061 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 15359002 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 ||||| || | || | ||| || || | | || | || | ||||||||| || Sbjct 15359001 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 15358945 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 ||| || ||||| ||| ||| || |||| ||||| ||| || Sbjct 15358944 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGC 15358903 >seq8 Length=29681327 Score = 89.7 bits (98), Expect = 6e-13 Identities = 270/412 (66%), Gaps = 14/412 (3%) Strand=Plus/Plus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || || || | || | ||| |||||| |||||| | ||| || || Sbjct 964089 CGGTCAAACCGCCCCGGTCTCAGCAACGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 964148 Query 14123 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179 || | |||| | || || |||| ||||| |||||||||||||||||||| ||| Sbjct 964149 GCAACCACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 964205 Query 14180 TTGATGGTTTGTTCGCGTTCATCATTC---GCAGGCATACCACCCGCACTGCGTTGCTTA 14236 || | || || || | ||||||||| || || ||| | | || ||| || Sbjct 964206 TTAAGCGTCTGCTCTCTCTCATCATTCCCTCCACCGATCCCAGTCCCTCT---CTGCCTA 964262 Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA 14296 || || || || || || || | ||| || || || || ||| || ||| || Sbjct 964263 CCAACAGCATCTATCTCGTCCACGAAGACAATGCACGGAGCATTCTCCTTGGCCTTTTTG 964322 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 || | ||| || || ||| ||||| ||||||||||||||||| ||||| | | | Sbjct 964323 AAAAGATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACAAACTCAGAACCA 964382 Query 14357 GAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415 | | || | || ||| || || || |||||| || ||||| || | || || || Sbjct 964383 G-AGATGGAGAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGTTTT 964441 Query 14416 CCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467 || || || || || |||| ||| |||| ||||||| |||||| Sbjct 964442 ACCAGTACCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCA 964493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618352669822560