Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq8 132 6e-26 seq1 131 2e-25 seq4 116 4e-21 seq7 114 2e-20 seq6 102 1e-16 seq9 93.3 5e-14 seq3 89.7 6e-13 >seq8 Length=29681327 Score = 132 bits (146), Expect = 6e-26 Identities = 303/451 (67%), Gaps = 4/451 (1%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || || || | || | |||| ||||| |||||| | | || || || Sbjct 964089 CGGTCAAACCGCCCCGGTCTCAGCAACGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 964148 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | |||| || ||| || | | ||||| ||||||||||| ||||| || || ||| Sbjct 964149 GCAACCACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTA 964208 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCACCAGCACTGCGTTGCTTTCCCAC 9702 | || || || | ||||||||| || | | | |||| | | ||| | || || Sbjct 964209 AGCGTCTGCTCTCTCTCATCATTCCCTCCACCGATC-CCAGTCCCTCTCTGCCTACCAAC 964267 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||||| ||||| || | |||||| ||||| || ||| || || || || || Sbjct 964268 AGCATCTATCTCGTCCACGAAGACAATGCACGGAGCATTCTCCTTGGCCTTTTTGAAAAG 964327 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822 ||| || || | | || || ||||| ||||||||||| ||||| | | | | | | Sbjct 964328 ATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACAAACTCAGAACCAG-AGA 964386 Query 9823 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || ||| || ||| || |||||| |||||||| || | ||||| ||||| | Sbjct 964387 TGGAGAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGTTTTACCAG 964446 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATC 9941 |||| || ||| |||||||| ||||| || ||| || ||| || | | | Sbjct 964447 TACCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTGAACC 964506 Query 9942 TCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 ||||||| | ||| ||||| ||||| | ||| Sbjct 964507 TCTCAGGCTTCTTCAGAAACTCCACCACTTC 964537 >seq1 Length=26309735 Score = 131 bits (144), Expect = 2e-25 Identities = 303/452 (67%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | ||| || ||| ||||| ||||| | | || || || Sbjct 2345850 CGGTCAAAACGGCCTGGTCTAAGCAGGGCGGAGTCAAGAATATCCGCTCTGTTGGTTGCA 2345909 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | | ||| || | | ||||||||||||||||| ||||| || |||||| Sbjct 2345910 GCAACCACGATCACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGGTTA 2345969 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | || ||||| | || ||||| || | | | |||| | | ||| | || | Sbjct 2345970 AGCGTCTGTTCTCTCTCGTCATTACCT--CCACCGATTCCAGTTCCTCTCTGCCTACCGA 2346027 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 9761 |||||||||||||||| | ||||| ||||| || ||| || || || || | Sbjct 2346028 CGGCATCAATCTCATCCACAAAGACAATGCACGGAGCATTCTCCTTGGCCTTTTTGAAAA 2346087 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 |||| || || | | || || ||||| ||||||||||| || || | | | | | Sbjct 2346088 GATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACGAACTCAGAACCTG-AG 2346146 Query 9822 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 |||| | ||| || ||| || |||||| || |||||| || | || || || || Sbjct 2346147 ATTGAAAAGAAAGGCACACCAGCTTCACCAGCGATGGCTTTTGCTAACAGTGTTTTTCCA 2346206 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTAT 9940 ||||| || ||| ||||||| ||||| || ||| | |||||| || | | Sbjct 2346207 GTACCGGGAGGACCAACGAGGAGAACACCTTTCGGGATCCTCGCGCCAACAGCAGTGAAC 2346266 Query 9941 CTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 |||||||| | ||| ||||| ||||| | ||| Sbjct 2346267 CTCTCAGGCTTCTTGAGAAACTCCACCACTTC 2346298 >seq4 Length=50002108 Score = 116 bits (128), Expect = 4e-21 Identities = 143/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 94809 ||||| || | ||||| ||||||||| | || | || | | || || ||| | Sbjct 15358930 AAGAAGGCCCAATGGGCCATGAAGTGGATCGACGGA---TCTCAGACTTTCGCGGAGAGG 15358986 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 || |||| || || || || || || ||||||||||| || ||||||| | || | Sbjct 15358987 ATCGTCGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATCTTC 15359046 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 |||||||||||||| || |||||||| ||||| ||||||||||||||| ||||| | Sbjct 15359047 TGGCTCAAGAAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCGAGA 15359106 Query 94930 GACGAGGGACTCCAC 94944 |||||||| || ||| Sbjct 15359107 GACGAGGGGCTTCAC 15359121 >seq7 Length=27187321 Score = 114 bits (126), Expect = 2e-20 Identities = 252/372 (68%), Gaps = 8/372 (2%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || ||||||||||| ||||| || || ||||| || || |||| ||||||||| || | Sbjct 11257574 AACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--C 11257631 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | ||| ||||| | | ||| | ||||| |||||||||||||| || || || |||| Sbjct 11257632 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCGATAAAAACAATGC 11257691 Query 9732 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGC--CCACACC 9789 | || || | ||| || || | ||||| || || || | ||| ||||||| Sbjct 11257692 AAGGCGCCTTGGCCTTAGCCTTCTCGAACAAATCCC-TA-ACCCTAGACGCACCCACACC 11257749 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 || || | ||| ||||| | | || | || || ||| || ||| | ||| || Sbjct 11257750 GACGAAAAGCTCAACAAACTCAGAAGCCGCGCAGGAGAAGAACGGCACACCGGCTTCTCC 11257809 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 |||| |||| || | ||||||||||| || || || |||| ||||||| || Sbjct 11257810 AGCAACAGCTCTAGCTAACAGAGTCTTACCAGTCCCGGGGGGACCCACGAGGAGACACCC 11257869 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969 | |||||||||||||| || ||| | || || | ||| | ||| || |||| Sbjct 11257870 TTTGGGAATCTTGGCGCCCAAGGCAGTGTACTTGTCCGGATTCTTCAAAAAGTCGACAAC 11257929 Query 9970 TTCTTCCAATTC 9981 ||| | ||| || Sbjct 11257930 TTCCTGCAACTC 11257941 >seq6 Length=53636577 Score = 102 bits (112), Expect = 1e-16 Identities = 277/418 (66%), Gaps = 16/418 (4%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | ||| || || || | || | ||||| || | | ||||| Sbjct 45675222 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 45675281 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | || ||||| | ||| ||||| | ||||||||| || Sbjct 45675282 CCATCCATCTCAGTTAGCAGCTGGTTCAAAGTCTGTTCTCTCTCATCATTCCCT------ 45675335 Query 9677 CCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 ||||| | ||| | |||| | || || ||||| |||||||||| ||||| ||| Sbjct 45675336 CCACCGATTCCTGTCCCTCTTTGCCTACCAACAGCATCGATCTCATCAACAAAGACAATG 45675395 Query 9731 CATGG-TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 || || | | | | | | ||| ||| ||||| || || | | ||| || ||||| Sbjct 45675396 CAAGGAGCGTTCTCCTTGGCCTTCTTGAAA-AGATCACGGACCCTCGAGGCACCAACACC 45675454 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9848 ||||||||||| ||||| | | ||| | || | || ||| || ||| || ||||| Sbjct 45675455 GACAAACATCTCAACAAACTCAGACCCGG-AGATGGAGAAGAACGGCACACCAGCTTCAC 45675513 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | || || ||| || || || ||||| || ||||| || ||| || || ||| Sbjct 45675514 CGGCGATAGCTTTCGCCAGCAGCGTCTTCCCAGTACCAGGAGGACCGATAAGCAGAACAC 45675573 Query 9909 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 || || ||| || ||| || | | |||||||| | ||| ||||| ||||| Sbjct 45675574 CTTTAGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 45675631 Score = 102 bits (112), Expect = 1e-16 Identities = 277/418 (66%), Gaps = 16/418 (4%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | ||| || || || | || | ||||| || | | ||||| Sbjct 45684660 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 45684719 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | || ||||| | ||| ||||| | ||||||||| || Sbjct 45684720 CCATCCATCTCAGTTAGCAGCTGGTTCAAAGTCTGTTCTCTCTCATCATTCCCT------ 45684773 Query 9677 CCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 ||||| | ||| | |||| | || || ||||| |||||||||| ||||| ||| Sbjct 45684774 CCACCGATTCCTGTCCCTCTTTGCCTACCAACAGCATCGATCTCATCAACAAAGACAATG 45684833 Query 9731 CATGG-TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 || || | | | | | | ||| ||| ||||| || || | | ||| || ||||| Sbjct 45684834 CAAGGAGCGTTCTCCTTGGCCTTCTTGAAA-AGATCACGGACCCTCGAGGCACCAACACC 45684892 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9848 ||||||||||| ||||| | | ||| | || | || ||| || ||| || ||||| Sbjct 45684893 GACAAACATCTCAACAAACTCAGACCCGG-AGATGGAGAAGAACGGCACACCAGCTTCAC 45684951 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | || || ||| || || || ||||| || ||||| || ||| || || ||| Sbjct 45684952 CGGCGATAGCTTTCGCCAGCAGCGTCTTCCCAGTACCAGGAGGACCGATAAGCAGAACAC 45685011 Query 9909 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 || || ||| || ||| || | | |||||||| | ||| ||||| ||||| Sbjct 45685012 CTTTAGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 45685069 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 105798 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCA 105857 |||| ||||||| |||||||| |||||||||||||||| |||||| ||||| | || Sbjct 23788906 TTGATATGGCCGTTGATCGTGGATGCTTCATTGATCAAAGCCAAAGTTTGAATATACACA 23788965 Query 105858 TGGA-AAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGG 105914 |||| || ||||| || |||| ||| |||| | ||| | ||| |||||| |||| Sbjct 23788966 TGGACAAACCCAACTTTG-CCAAACTCACTTCCTTACACTTCCACACTTGGAAAAAGG 23789022 >seq9 Length=38354807 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 94822 GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAG 94881 || |||| || || ||||||||||| ||| ||||||| | || | ||||||||||| Sbjct 24442624 GCCTGTGCCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTCAAGAAA 24442683 Query 94882 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||||| ||||| || ||| | ||||||||| ||| | |||||||| ||||| || Sbjct 24442684 CGAGGGCTCATACCTGGTTTGACCTTCTCCAATGAGTTGATCTCTCGAGACGACGG 24442739 >seq3 Length=29132933 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 94831 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTC 94890 || || ||||||||||| ||| ||||||| | || | ||||||||||| ||||| ||| Sbjct 13038980 GAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTCAAGAAACGAGGGCTC 13039039 Query 94891 ATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 || || ||| | ||||||||| ||| | |||||||| ||||| || Sbjct 13039040 ATACCTGGTTTGACCTTCTCCAATGAGTTGATCTCTCGAGACGACGG 13039086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583182963846240