Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4 170 2e-37 seq8 84.2 2e-11 >seq4 Length=50002108 Score = 170 bits (188), Expect = 2e-37 Identities = 353/515 (69%), Gaps = 18/515 (3%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| ||| |||||| | || ||| |||||||| || ||||| || ||| Sbjct 15358615 TCCTTCTGGACCGCCGAGGAAGTCGATCTCTCCGGAGACACACGCGACTGGGAGAATCTC 15358674 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 || ||| |||| || |||||||| ||||| ||||||||||| || || ||| Sbjct 15358675 AACGACGGAGAGCGCCACTTCATCAAACACGTCCTAGCCTTCTTCGCCGCCTCCGACGGA 15358734 Query 59733 ATTGTGATGGAAAATATAGACAT---GAACTTTTCCAAGGATGTCCAGATTGCCGAGGCC 59789 || || |||| || | | | | | | ||| || |||||| | ||||||| Sbjct 15358735 ATCGTCCTGGAGAACCTCGCCTCCCGGTTCATGTCC---GACGTCCAGGTCTCCGAGGCG 15358791 Query 59790 CGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCT 59848 || | ||||||| | ||| ||| | ||| |||||||| |||| ||| || Sbjct 15358792 CGTGCCTTCTACGGCTTCCAGATCGCG-ATTGAGAACATCCACTCAGAGATGTATAGCCT 15358850 Query 59849 CATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGA 59908 | || |||| | | |||||||| | |||| || ||| ||||| ||||| || Sbjct 15358851 CCTGCTCGACACCTACATCAAGGATAACAAGGAGAGGGACCATCTCTTCCGGGCCATCGA 15358910 Query 59909 GACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAG 59967 ||| ||||| || || | || || ||||||||||| ||||||| | | ||| Sbjct 15358911 GACCATCCCCTGC-GTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATC-GAC--GGAT 15358966 Query 59968 CATCA----TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCT 60023 | ||| || || | | || | || || || ||||||||||| ||||||||||| Sbjct 15358967 C-TCAGACTTTCGCGGAGAGGATCGTCGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCC 15359025 Query 60024 GGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTC 60083 || ||||| | || ||||||||||| |||||||| |||||||| || |||| ||| Sbjct 15359026 GGAAGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGTCTGACCTTC 15359085 Query 60084 TCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||||||||| || | |||||||| || || Sbjct 15359086 TCCAACGAGCTGATCTCGAGAGACGAGGGGCTTCA 15359120 >seq8 Length=29681327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 ||||| || |||||||| || || || || || | |||||||||||| ||||| Sbjct 8205102 GATGCAAGATTGCACACAGCAGTTTCTGTTGGACTTGTGTACTCGATGATTTCAGTGCAT 8205043 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 |||||||| ||||| ||||| || | || | ||||||||| ||| |||||| | |||| Sbjct 8205042 AAATTAGAAGACTTTATGGTACCCAGATTTTGCTGGTTGCTTTTCCTGTTACATGAGTCC 8204983 Query 79177 T 79177 | Sbjct 8204982 T 8204982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548451599365440