Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 116 4e-21 seq6 89.7 6e-13 seq380 86.0 7e-12 seq203 86.0 7e-12 seq8 86.0 7e-12 seq2 86.0 7e-12 seq9 82.4 8e-11 >seq4 Length=50002108 Score = 116 bits (128), Expect = 4e-21 Identities = 325/488 (67%), Gaps = 12/488 (2%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| || || || || | || |||||||| || ||||||||||| | ||| ||||| Sbjct 15359099 ATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATC 15359040 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | |||||| || ||||||||| ||||| || || || |||||||| | | | | Sbjct 15359039 GAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCAGGCGAAGGCGACGATCCTCTCC 15358980 Query 74904 GCGAACGG-TGC-ATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTT--TCGTTTGAC 74959 ||||| | || ||| | | ||||| || ||||||| || || ||| ||| Sbjct 15358979 GCGAAAGTCTGAGATCCGTCG--ATCCACTTCATGGCCCATTGGGCCTTCTTCGC--GAC 15358924 Query 74960 CGCAGGG-ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGA 75018 |||||| | || ||||| || ||||||| || |||| | | |||||||| | Sbjct 15358923 -GCAGGGGATGGTCTCGATGGCCCGGAAGAGATGGTCCCTCTCCTTGTTATCCTTGATGT 15358865 Query 75019 GCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTAC 75077 |||| | || || ||| |||| || || || ||| | ||| |||| | Sbjct 15358864 AGGTGTCGAGCAGGAGGCTATACATCTCTGAGTGGATGTTCTCAATCG-CGATCTGGAAG 15358806 Query 75078 GCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTC 75137 ||||||| | |||||||| | | ||| || || || | ||| ||| Sbjct 15358805 CCGTAGAAGGCACGCGCCTCGGAGACCTGGACGTCGGACATGAACCGGGAGGCGAGGTTC 15358746 Query 75138 TCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGC 75197 |||| |||||| ||||| ||||||||||| || || || || |||||| ||||||||| Sbjct 15358745 TCCAGGACGATTCCGTCGGAGGCGGCGAAGAAGGCTAGGACGTGTTTGATGAAGTGGCGC 15358686 Query 75198 TCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACC 75257 || |||| |||| || ||||| || ||| || | | ||| | |||||| | Sbjct 15358685 TCTCCGTCGTTGAGATTCTCCCAGTCGCGTGTGTCTCCGGAGAGATCGACTTCCTCGGCG 15358626 Query 75258 GTCCAGAA 75265 |||||||| Sbjct 15358625 GTCCAGAA 15358618 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||| Sbjct 6553759 ACTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 6553700 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 6553699 ACTGAGCTATGAAAGC 6553684 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| ||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1564813 TGCTTTCGTTGAGAGGTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1564872 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 1564873 TGAGCTACGAGAGCA 1564887 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2423839 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2423780 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2423779 TGAGCTATGAAAGC 2423766 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 8237993 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 8238052 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 8238053 TGAGCTATGAAAGC 8238066 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 8373974 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 8374033 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 8374034 TGAGCTACGAGAGC 8374047 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 20354788 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 20354847 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 20354848 TGAGCTATGAAAGC 20354861 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 37695158 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 37695217 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 37695218 TGAGCTATGAAAGC 37695231 >seq6 Length=53636577 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 7286103 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 7286162 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 7286163 TGAGCTACGAGAGC 7286176 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 47335562 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 47335503 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 47335502 TGAGCTATGAAAGCA 47335488 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 20795592 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 20795651 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 20795652 TGAGCTATGAAAGC 20795665 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 47974408 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 47974467 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 47974468 TGAGCTATGAAAGC 47974481 >seq380 Length=48093 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 28268 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 28327 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 28328 TGAGCTATGAAAGC 28341 >seq203 Length=88301 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 47464 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 47405 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 47404 TGAGCTATGAAAGC 47391 >seq8 Length=29681327 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 14644233 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 14644174 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 14644173 TGAGCTATGAAAGC 14644160 >seq2 Length=43799612 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 32525924 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 32525865 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 32525864 TGAGCTATGAAAGC 32525851 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 34589336 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 34589395 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 34589396 TGAGCTATGAAAGC 34589409 >seq9 Length=38354807 Score = 82.4 bits (90), Expect = 8e-11 Identities = 67/79 (85%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 79620 CAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-A 79678 |||| ||||||| || | |||| |||| ||||||||||||||||||||||||||| | Sbjct 34509002 CAGA-TGCTTTCATTGGGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAA 34509060 Query 79679 CCAATTGAGCTACGAAAGC 79697 |||| ||||||| |||||| Sbjct 34509061 CCAACTGAGCTATGAAAGC 34509079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547142974024800