Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 seq2 109 4e-19 >seq5 Length=45943323 Score = 116 bits (128), Expect = 3e-21 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 29951 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGC 30010 || ||||| | |||| | || || ||||||||| || |||||||| || || || || Sbjct 37434456 ACATGAGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGG 37434515 Query 30011 CCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAAC 30070 ||||| ||| | || | ||| || | ||||||||||||||| || || |||||| ||| Sbjct 37434516 CCCATATCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAAC 37434575 Query 30071 TG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30127 || |||| ||||||||||||||| ||||| || | ||| |||||||| Sbjct 37434576 TGTGCGAACAT---GTGGCACGGAGGAAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAA 37434632 Query 30128 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 || | | ||||| |||| || || || |||||| |||| Sbjct 37434633 GCCGATAATATGATACGCCGATCATCAGGATTGTTCTTGAT 37434673 >seq2 Length=43799612 Score = 109 bits (120), Expect = 4e-19 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 29950 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 30009 ||||||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 41543387 GACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAGGCAATGTTAAAAGGTACACCAAG 41543446 Query 30010 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 30069 ||||| || | || | ||| || | ||||||||||||||||| | |||||||| Sbjct 41543447 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAAAA 41543506 Query 30070 CTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30126 ||| | |||| |||||| |||||||| ||||| || | ||| || ||||| Sbjct 41543507 CTGAGCAAACAT---GTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCA 41543563 Query 30127 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 || ||| || || |||| || || ||||||||| |||| Sbjct 41543564 AGCCGACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGAT 41543605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406257533430192