Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq10676 576 2e-159 seq3442 87.8 2e-12 >seq10676 Length=153368 Score = 576 bits (638), Expect = 2e-159 Identities = 700/954 (73%), Gaps = 0/954 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTT 176206 ||||| |||| ||||||||||| | |||||||| | | || || | | || Sbjct 1292 TTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCAACTTCCGTTT 1233 Query 176207 TTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAG 176266 |||| | ||||| ||||| || || || || ||||| || |||||||| ||||| || Sbjct 1232 TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 1173 Query 176267 CAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACG 176326 | |||||||| || || |||||||| || || ||||| || | | || | || | Sbjct 1172 CTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAG 1113 Query 176327 CAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 176386 | || || | || || || || ||||||||||| ||| | ||||| |||||||| |||| Sbjct 1112 CTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACA 1053 Query 176387 ATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGG 176446 | || || || || |||| |||| | ||||| | | ||| | | ||| |||| Sbjct 1052 ACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGG 993 Query 176447 GACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACT 176506 | || | ||||||||||||| | | || || |||||||||||||| ||||||||| | Sbjct 992 GTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 933 Query 176507 CTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTT 176566 | || || || | || || | || |||||| | |||| ||| | ||||||||| || Sbjct 932 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTT 873 Query 176567 TCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAG 176626 | ||||||||||||||||| || || || ||||| |||||||||||| |||||||||| | Sbjct 872 TTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGG 813 Query 176627 CAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTG 176686 | |||||||||||||| ||||||||||| || ||| | || ||||| ||||| || || | Sbjct 812 CTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCG 753 Query 176687 GATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAA 176746 | || || || || ||||| || | | || |||||| | | || || || | Sbjct 752 GCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCA 693 Query 176747 CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACA 176806 | ||||| ||||| || | || |||| |||||| ||||||||||| || ||||||| Sbjct 692 CAGAAAATGAATCTGCTAATGAAGGGTACAGATTCGGTCAAGAAGAAGAAACTTACAACA 633 Query 176807 TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACT 176866 |||||||||| |||||||| ||||| || | |||||||| |||||| |||||| || | Sbjct 632 TTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATT 573 Query 176867 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAA 176926 | | | | || |||||| | || || | || || || | || ||||||||||| Sbjct 572 CTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTT 513 Query 176927 TGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG 176986 | ||| || | || ||||| |||||||| || |||||||| |||||||| || || | | Sbjct 512 TAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTG 453 Query 176987 ACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTA 177046 | | || || ||| ||| |||| ||||| |||||||||| |||||||||| Sbjct 452 ATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTA 393 Query 177047 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 ||||||||||||| || |||||||||||||||||||| || ||||| ||||||| Sbjct 392 TGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 339 >seq3442 Length=4740 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 176785 CAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTC 176844 |||||| |||| || ||||||||||||||||| |||||||| ||||| || | |||||| Sbjct 4279 CAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTC 4338 Query 176845 CAGTATGCTTCTTTCAATAACTC 176867 || |||||| |||||| || || Sbjct 4339 CAATATGCTAGTTTCAACAATTC 4361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603413863672320