Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5 122 8e-23 >seq5 Length=45943323 Score = 122 bits (134), Expect = 8e-23 Identities = 222/320 (69%), Gaps = 4/320 (1%) Strand=Plus/Plus Query 6568 ATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGACATGAGCGA 6626 ||| |||||||| | ||| | | || || ||||| | | | ||| |||||||| | Sbjct 37434407 ATGAGCATCCCCAATGACATGGATAAAATCACCGGGAACAAGATCACAC-ACATGAGCTA 37434465 Query 6627 TCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTC 6686 |||| | || || |||| ||| ||||||||| |||||||| || | ||||| || Sbjct 37434466 GCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATATCCG 37434525 Query 6687 CCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGG 6746 | || || ||||| | ||| || || |||||||| | ||| |||||||| || || Sbjct 37434526 CTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAACTGTGCGAACA 37434585 Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 |||||||||| || ||||||||||| ||| || |||||||| || | | | || Sbjct 37434586 TGTGGCACGGAGGAAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCCGATAATATGA 37434645 Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTG-CAGCTGGTCCGCT 6865 | | | |||||||| || ||| | ||||||| || | ||| |||||| || | Sbjct 37434646 TACGCCGATCATCAGGATTGTTCTTGATCTTGTCGATTACAT-CTGCCAGCTGATCAAAT 37434704 Query 6866 CCCTGTCCCGAATAGTCCGC 6885 || || || | ||| || || Sbjct 37434705 CCTTGGCCAGTATAATCAGC 37434724 Score = 122 bits (134), Expect = 8e-23 Identities = 222/320 (69%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTG-CAGTACGTGATCGACACCTTGAAGCG 34518 || || ||| | || || ||| || |||||| ||| | || ||||||| | ||| Sbjct 37434724 GCTGATTATACTGGCCAAGGATTTGATCAGCTGGCAG-ATGTAATCGACAAGATCAAGAA 37434666 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 || |||||||| | | ||| | | | || |||||||| || ||| ||||| Sbjct 37434665 CAATCCTGATGATCGGCGTATCATATTATCGGCTTGGAACCCTTCTGACCTCAAGCTGAT 37434606 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTG 34638 |||||| || |||||||||| || || |||||||| ||| | |||||||| || || Sbjct 37434605 GGCGCTTCCTCCGTGCCACATGTTCGCACAGTTCTACGTGGCGGAAGGGGAGCTCTCGTG 37434546 Query 34639 CCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTA 34698 ||| | ||||| || || | || ||||| | || |||||||| ||||||||| || Sbjct 37434545 TCAGATGTATCAGCGTTCAGCGGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCCTA 37434486 Query 34699 CGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGGTGC 34757 | |||| || || | |||| | |||||||| ||| | | | ||||| || || | | | Sbjct 37434485 CTCTCTTCTGACTTGCATGCTAGCTCATGT-GTGTGATCTTGTTCCCGGTGATTTTATCC 37434427 Query 34758 ATACGTTGGGGGATGCGCAT 34777 || | |||||||| ||| Sbjct 37434426 ATGTCATTGGGGATGCTCAT 37434407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448202579382720