Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 4e-13 >seq5 Length=45943323 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 118488 ATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTG 118547 ||| ||||||||||||||||| ||| || || ||||| || ||| | || || Sbjct 37434401 ATACACATGAGCATCCCCAATGACATGGATAAAATCACCGGGAACAAGATCACACACATG 37434460 Query 118548 AGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCAT 118607 ||| | |||| | |||| | | |||| || | ||||| || ||||| || ||||| Sbjct 37434461 AGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCAT 37434520 Query 118608 GTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACT 118667 || ||||| | ||| |||| || || ||||||||||| | || || || ||||| Sbjct 37434521 ATCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAACTGTGC 37434580 Query 118668 TATGATGTGACATGGAGGCAGAACCAT 118694 | ||||| || ||||| || |||| Sbjct 37434581 GAACATGTGGCACGGAGGAAGCGCCAT 37434607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414422870869264