Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 1e-12 >seq7 Length=27187321 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||||||||| || || || || || | || ||||| ||| || Sbjct 640570 ATGCAAATTTTCGTGAAAACTCTCACCGGCAAGACCATCACTCTCGAAGTCGAGAGCTCC 640511 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| || |||| ||||| || || ||||| |||||| |||| || Sbjct 640510 GAC-----ACCATCGATAACGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGG 640456 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || ||||| ||||| | || || | ||| | |||| |||| | Sbjct 640455 ACCAGCAGAGGCTCATCTTCGCCGGTAAACAGCTCGAGGATGGACGTACCTTGGCCGACT 640396 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| || ||| ||| | ||| | ||| | | ||| | || ||| Sbjct 640395 ACAACATCCAGAAGGAGTCGACTCTCCATCTCGTTCTCAGGTTGAGAGGTGGC 640343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355816097408652