Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 9e-16 seq7 91.5 1e-13 seq6 91.5 1e-13 seq5 87.8 2e-12 seq4 82.4 7e-11 >seq9 Length=38354807 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||||||||| || || || |||||| || || || ||||| || | || || | Sbjct 21315359 CGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACCA 21315418 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188 || |||||||| ||||| || || || ||||||||||||| ||||||| | | ||| || Sbjct 21315419 TCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG-ATCCCCTCCTT 21315477 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| || || |||| ||| | | | || ||| |||||| |||| |||| Sbjct 21315478 GTCCTGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTGA 21315536 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || ||||| || |||| ||| || ||||| Sbjct 21315537 TAGTCTTCCCGGTCAGTGTCTTAATAAAAATCTGCAT 21315573 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | || || ||||||||||| || || ||||||||| || || ||||| || Sbjct 21327375 CCTCCACGTAGACGCAACACCAAATGAAGAGTCGACTCTTTTTGAATGTTGTAATCTGCC 21327434 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 | || || | || || ||||| || || || || || ||||||||||||| ||||||| Sbjct 21327435 AAAGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 21327494 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCA 39235 | | ||| ||||| ||| || || | ||| | | | || ||| ||||| Sbjct 21327495 -ATTCCCTCCTTGTCTTGGATCTTAGCCTTCA-CGTTGTCAATGGTGTCGGAACTCTCCA 21327552 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| ||||| | || || ||||| || ||||| ||||| ||||| Sbjct 21327553 CCTCCAGAGTGATGGTCTTCCCGGTCAGTGTCTTAACGAAGATCTGCAT 21327601 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||| || || || || || || || || |||| |||| ||| Sbjct 21327849 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCTGCCGTCTTCA 21327908 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || | | ||||||||| |||||| | | ||| |||||| Sbjct 21327909 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATCCC-CTCCTTGTCCTG 21327967 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || ||| | ||| | || | | ||| |||||| || | || ||| ||| Sbjct 21327968 GATCTTTGCTTTCA-CGTTGTCAATGGTGTCGGAGCTCTCCACCTCTAGGGTAATAGTTT 21328026 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||||| || ||||| ||||| ||||| Sbjct 21328027 TTCCCGTCAAGGTCTTAACGAAGATCTGCAT 21328057 >seq7 Length=27187321 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| || || || || || ||||| ||||| || |||| || ||||| Sbjct 17979948 ATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCTTCCAGCTG 17980007 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTT 39199 ||| || || || || || |||||||||| ||||||| | | || |||||| ||| | Sbjct 17980008 TTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGTGGG-ATTCCTTCCTTGTCCTGGATCT 17980066 Query 39200 TCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | ||||| | | | || ||| || || || || | ||||| | || |||| Sbjct 17980067 TGGCTTTGACATTGTCGATGGTGTCGGATGATTCGACCTCGAGGGTGATCGTCTTCCCCG 17980126 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 | || ||||| || ||||| ||||||||| || Sbjct 17980127 TTAGGGTTTTCACGAAGATCTGCATCTTTGCG 17980158 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 18014074 ATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCCAGCTG 18014133 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTT 39199 ||| || || || || || |||||||||| ||||||| | | ||| |||||| ||| | Sbjct 18014134 TTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGTGGG-ATTCCCTCCTTGTCCTGGATCT 18014192 Query 39200 TCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | |||| | | | || ||| || || || || | ||||| | || |||| Sbjct 18014193 TGGCCTTGACATTGTCGATGGTGTCGGATGATTCGACCTCGAGGGTGATTGTCTTCCCCG 18014252 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 | || ||||| || ||||| ||||||||| || Sbjct 18014253 TTAGGGTTTTCACGAAGATCTGCATCTTTGCG 18014284 >seq6 Length=53636577 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | ||| | |||||| || ||||| ||| || || || || || || || Sbjct 30640175 CCTCCTCTCAGGCGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 30640116 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 || || | |||| || ||||| || || || || || ||||||||||||| ||||||| Sbjct 30640115 AGCGTCCTCCCGTCTTCGAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 30640056 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || |||||| || || |||| | | | ||| ||| || || || Sbjct 30640055 ATCCCT-TCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCGGATGATTCGAC 30639997 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| |||||||| ||||| ||| Sbjct 30639996 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTT 30639945 >seq5 Length=45943323 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 32128045 ATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCCAGCTG 32127986 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTT 39199 || || || ||||| || |||||||||| ||| ||| | || || |||||| ||| | Sbjct 32127985 CTTCCCGGCGAATATCAGTCGCTGCTGGTCCGGAGGGATCCCT-TCCTTGTCCTGGATCT 32127927 Query 39200 TCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258 | |||| ||| | | | || ||| ||||| || || | || || | || ||| Sbjct 32127926 TGGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTTATCGTCTTACCC 32127868 Query 39259 GTCAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 || || ||||| || ||||| ||||||||| || || Sbjct 32127867 GTTAGGGTTTTCACGAAGATCTGCATCTTTGCGGCG 32127832 >seq4 Length=50002108 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | |||| || ||||| ||| || || || || || ||||| Sbjct 49702186 CCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 49702127 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| |||| || ||||| || || || || || || ||||||||||| | || Sbjct 49702126 AGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCCGGAGGG 49702067 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || || ||||| ||| || |||| ||| | | | || ||| ||||| || Sbjct 49702066 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCGAC 49702008 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| || ||||| |||||| || Sbjct 49702007 CTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCCTT 49701956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429489710211188