Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1946 127 1e-24 seq4 125 5e-24 seq7 107 1e-18 seq3 107 1e-18 seq9 105 5e-18 seq5 100 2e-16 seq6 91.5 1e-13 seq1376 82.4 5e-11 >seq1946 Length=8506 Score = 127 bits (140), Expect = 1e-24 Identities = 146/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| || || || || ||||||||||| || || ||| Sbjct 1966 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGTCC 2025 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || | | |||||||||||| | || || || Sbjct 2026 TCCGACACCATCGACAATGTCAAAGCCAAGA-TCCAAGACAAAGAAGGTATCCCTCCGGA 2084 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || ||||| ||||| || ||||| | |||||||| | || || Sbjct 2085 TCAGCAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGCACTTTGGCTGACTA 2144 Query 23787 CAACATACAAAAAG 23800 |||||| || |||| Sbjct 2145 CAACATCCAGAAAG 2158 >seq4 Length=50002108 Score = 125 bits (138), Expect = 5e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| || || ||||||||||| || || ||| | Sbjct 24965262 ATGCAGATCTTCGTGAAAACCCTAACGGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 24965321 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || | | |||||||||||| | || || ||||| Sbjct 24965322 GACACCATCGACAATGTCAAAGCCAAGA-TCCAAGACAAAGAAGGTATCCCTCCGGATCA 24965380 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| ||||| || ||||| | || ||||| | || ||||| Sbjct 24965381 GCAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGTACTTTGGCTGACTACAA 24965440 Query 23790 CATACAAAAAG 23800 ||| || |||| Sbjct 24965441 CATCCAGAAAG 24965451 Score = 109 bits (120), Expect = 4e-19 Identities = 146/199 (73%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 23604 ACTTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTG 23662 ||| ||| |||||||| ||||| |||||||| || ||||| || ||||| ||||| || | Sbjct 45703288 ACTCAAAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACCATCACCCTCGAGGTCG 45703347 Query 23663 ACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCG 23721 | ||| | ||||| | || ||| | || | || | | |||||||||||| | || Sbjct 45703348 AGTCCTCCGACACCATCGACAATGTCAAGGCCAAGA-TCCAAGACAAAGAAGGTATCCCT 45703406 Query 23722 CCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC 23781 || ||||| ||| | || || || ||||| ||||| || || || | || ||||| | Sbjct 45703407 CCGGATCAGCAGAGATTGATCTTCGCCGGTAAACAGCTCGAGGATGGCCGTACTTTGGCT 45703466 Query 23782 GATTACAACATACAAAAAG 23800 || |||||||| || |||| Sbjct 45703467 GACTACAACATCCAGAAAG 45703485 >seq7 Length=27187321 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || ||||| |||||| | || || || | | Sbjct 639886 ATGCAGATTTTTGTGAAGACCCTCACTGGCAAAACCATCACTTTGGAGGTGGAGAGCTCT 639827 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| ||| |||||||| ||| | || ||||| ||| Sbjct 639826 GACACGATCGATAACGTCAAGGCAAAGATTCAGGACAAAGAGGGTATCCCACCAGACCAA 639767 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || || ||||| || || || ||||||| ||| ||| | | ||||||||| Sbjct 639766 CAAAGACTTATCTTCGCCGGGAAGCAGCTAGAAGACGGACGTACTCTTGCGGATTACAAC 639707 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 639706 ATTCAGAAAGAGTCTAC 639690 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| ||||| || || || |||||||||||||| || | | Sbjct 640570 ATGCAAATTTTCGTGAAAACTCTCACCGGCAAGACCATCACTCTCGAAGTCGAGAGCTCC 640511 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| |||||| | || || || || Sbjct 640510 GACACCATCGATAACGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAG 640451 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| ||||| || || || | ||| || || | ||| |||||| Sbjct 640450 CAGAGGCTCATCTTCGCCGGTAAACAGCTCGAGGATGGACGTACCTTGGCCGACTACAAC 640391 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||| | ||| | |||||| |||| || Sbjct 640390 ATCCAGAAGGAGTCGACTCTCCATCTCGTTCTCAGGTTGAGAGGTGG 640344 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| |||||||| || ||||| |||||| | || ||||| | | Sbjct 639658 ATGCAGATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAGGTTGAGAGCTCA 639599 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || ||| ||||| ||||| | || |||||||| Sbjct 639598 GACACAATCGATAATGTCAAGGC-TAAGATTCAGGACAAGGAAGGGATCCCACCAGATCA 639540 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || || || || | ||||| | | || ||||| Sbjct 639539 GCAGAGACTCATCTTCGCCGGTAAGCAGCTTGAGGATGGTCGCACGCTTGCTGACTACAA 639480 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| ||||| || | || || ||| Sbjct 639479 TATCCAAAAGGAGTCGACTCTTCACTTGGTT 639449 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | |||||||| || ||||||||||| ||||| | | Sbjct 640342 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACTCTCGAGGTTGAGAGCTCC 640283 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || || ||||| ||||| | || || ||||| Sbjct 640282 GACACTATTGACAATGTCAAGGC-GAAGATACAGGACAAGGAAGGCATCCCTCCGGATCA 640224 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || ||||| || | ||||| | | || ||||| Sbjct 640223 GCAGAGGCTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACGCTCGCTGACTACAA 640164 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 640163 CATCCAGAAGGAGTCGAC 640146 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGT--TGA-CTCC 23667 |||||||| |||||||| || || || |||| |||||||| ||||| || | | |||| Sbjct 456482 ATGCAGATATTCGTTAAGACTCTTACCTGAAAGACGATCACCCTCGAGGTGTTAAGCTCC 456541 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||| | || || ||||| | || | | || || |||||| | || || || Sbjct 456542 ---GACACGATCGACAACGTTAAAGCCAAGA-TCCAGGATAAGGAAGGTATCCCTCCCGA 456597 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | || || || ||||| || || || ||||| | | ||| | | ||||| Sbjct 456598 TCAGCAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAAGATGGCAGGACTCTTGCTGATTA 456657 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 456658 CAACATCCACAAAGAGTCCAC 456678 >seq3 Length=29132933 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || ||||||||||| || ||||| ||||| || || | | Sbjct 9516666 ATGCAGATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTCC 9516725 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| || || ||||| |||||| | || || ||||| Sbjct 9516726 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCAG 9516785 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || |||||||| || || ||||||| | || || | ||| |||||| Sbjct 9516786 CAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCAGAACATTGGCCGACTACAAC 9516845 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||| | ||| | ||| | || || || Sbjct 9516846 ATCCAGAAGGAGTCTACGCTTCATCTCGTTCTCAGGCTTCGTGGTGG 9516892 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| ||||| ||||||||||| || ||||| ||||| || || | Sbjct 16259083 AAGATGCAGATCTTCGTGAAAACTCTCACGGGAAAGACAATCACCCTCGAGGTGGAAAGC 16259024 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | ||| || || ||||| ||||| | || || ||| Sbjct 16259023 TCCGACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGGAT 16258964 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || ||||| || || || || || | || || || | ||| ||| Sbjct 16258963 CAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGAACCTTGGCCGACTAC 16258904 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 16258903 AACATCCAGAAGGAGTCTAC 16258884 >seq9 Length=38354807 Score = 105 bits (116), Expect = 5e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23602 TTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTT 23661 ||||| | |||||||| |||||||| || ||||||||||| || ||||| ||||| || Sbjct 21316257 TTACTACAGATGCAGATATTCGTTAAGACTCTCACGGGAAAGACAATCACCCTCGAGGTG 21316198 Query 23662 GACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACC 23720 || | | ||||| | || || ||||| | || | || ||||| ||||| | || Sbjct 21316197 GAAAGCTCAGACACCATCGACAACGTTAAAGCGAAGA-TTCAGGACAAGGAAGGCATTCC 21316139 Query 23721 GCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGG 23780 || |||| ||| | | || || ||||| || ||||| ||||| | || || | | Sbjct 21316138 CCCGGATCGGCAGAGGCTTATCTTCGCCGGGAAGCAACTTGAAGATGGGCGTGCTCTCGC 21316079 Query 23781 CGATTACAACATACAAAAAGAGTCCAC 23807 || |||||||| ||||||||||| || Sbjct 21316078 TGACTACAACATCCAAAAAGAGTCGAC 21316052 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| ||| | ||||||||||| || || || || || || | | Sbjct 21328057 ATGCAGATCTTCGTTAAGACCTTGACGGGAAAAACTATTACCCTAGAGGTGGAGAGCTCC 21327998 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| ||| || ||||| || || | || || || || Sbjct 21327997 GACACCATTGACAACGTGAAAGCAAAGATCCAGGACAAGGAGGGGATCCCACCGGACCAG 21327938 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||||||||| || || ||||||| | ||| | | || |||||| Sbjct 21327937 CAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCAGAACTCTCGCTGACTACAAC 21327878 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || |||||||| | || || ||| | ||| | || || || Sbjct 21327877 ATCCAGAAGGAGTCCACCCTCCACTTGGTTCTCAGGCTCCGTGGTGG 21327831 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || ||||| || ||||| ||||||||||| | | Sbjct 21327373 ATGCAGATCTTTGTCAAGACACTAACCGGAAAGACAATCACCCTCGAAGTTGAGAGCTCC 21327314 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || || ||||| || ||| | || ||||| || Sbjct 21327313 GACACCATTGATAATGTCAAAGC-TAAGATCCAAGACAAGGAGGGTATCCCTCCAGACCA 21327255 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || || || |||| | ||| | | || ||||| Sbjct 21327254 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGGACTCTCGCTGACTACAA 21327195 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| ||||| ||| | || || || || | |||| ||||| Sbjct 21327194 TATCCAAAAGGAGTCTACACTTCACTTGGTGTTGCGTCTGCGTGGAGG 21327147 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || | || || || || || ||| | || || || | | Sbjct 21303376 ATGCAGATTTTCGTTAAGACATTGACCGGCAAGACCATTACTTTGGAGGTGGAGAGCTCC 21303317 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || || ||||| || ||| | || ||||| || Sbjct 21303316 GACACCATTGATAATGTCAAAGC-TAAGATCCAAGACAAGGAGGGTATCCCTCCAGACCA 21303258 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || || || |||| | ||| | | || ||||| Sbjct 21303257 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGGACTCTCGCTGACTACAA 21303198 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| ||||| ||| | || || || || | |||| ||||| Sbjct 21303197 TATCCAAAAGGAGTCTACACTTCACTTGGTGTTGCGTCTGCGTGGAGG 21303150 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || || || || || || |||||||| || || || | Sbjct 21327601 ATGCAGATCTTCGTTAAGACACTGACCGGGAAGACCATCACTCTGGAGGTGGAGAGTTCC 21327542 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || || || || Sbjct 21327541 GACACCATTGACAACGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCGGACCAG 21327482 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || || | |||||||| | ||||||||| Sbjct 21327481 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACTTTGGCAGATTACAAC 21327422 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||||||||| || | ||||| || || Sbjct 21327421 ATTCAAAAAGAGTCGACTCTTCATTTGGTGTT 21327390 Score = 84.2 bits (92), Expect = 1e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| |||| || || || || || || |||||| | || || || | | Sbjct 21315573 ATGCAGATTTTTATTAAGACACTGACCGGGAAGACTATCACTTTGGAGGTGGAGAGCTCC 21315514 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| || || | || || || || Sbjct 21315513 GACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGATCCCACCGGACCAG 21315454 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || || | ||||| || | ||||||||| Sbjct 21315453 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCTTGGCTGATTACAAC 21315394 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGG 23834 || || |||||||| || | || || || ||| | |||| || Sbjct 21315393 ATTCAGAAAGAGTCAACCCTTCACTTGGTGTTACGTCTGCGCGG 21315350 >seq5 Length=45943323 Score = 100 bits (110), Expect = 2e-16 Identities = 166/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| ||||| || ||||| || || ||||| ||||| || || | Sbjct 16838037 AAGATGCAGATATTCGTGAAAACACTGACGGGCAAGACCATCACCCTCGAGGTGGAGAGC 16837978 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||||||||| | || | || Sbjct 16837977 AGTGACACCATCGACAATGTCAAGGCCAAGA-TCCAGGACAAAGAAGGAATCCCATCGGA 16837919 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | || || || |||| ||||| || || || | ||||| || | || || Sbjct 16837918 TCAGCAGAGGTTGATCTTCACCGGAAAACAGCTTGAGGATGGTCGCACCTTGGCTGACTA 16837859 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 |||||| || |||||||| || | ||| | ||| | ||||| | ||||| |||| Sbjct 16837858 CAACATCCAGAAAGAGTCGACTCTGCATCTTGTTCTGAGGTTAAGGGGAGGTATCA 16837803 >seq6 Length=53636577 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || |||||||| ||||| || ||||| || || || || || || Sbjct 30639946 AAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTCGAATCA 30640005 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || ||| ||||| ||||| | || || || Sbjct 30640006 TCCGACACGATCGACAATGTCAAGGC-CAAGATTCAGGACAAGGAAGGGATCCCACCGGA 30640064 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || || ||||| || || || ||||||| | || | | || || Sbjct 30640065 CCAGCAGCGTCTGATCTTCGCCGGGAAGCAGCTCGAAGACGGGAGGACGCTCGCGGACTA 30640124 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||||| || || ||||| || | || || || | | || |||||||| Sbjct 30640125 CAACATCCAGAAGGAGTCGACGCTTCACTTGGTGCTCCGCCTGAGAGGAGGA 30640176 Score = 84.2 bits (92), Expect = 1e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||||||| |||| ||||| ||||| | | || || ||||| || || || ||| Sbjct 48283853 GACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTCGCCGGGAAGCAGCTTGAA 48283912 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 |||| || || ||| |||||||||||| || |||||||| || Sbjct 48283913 GACGGCCGAACCCTAGCCGATTACAACATCCAGAAAGAGTCTAC 48283956 >seq1376 Length=11974 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||| || |||| |||||||||||| | |||| ||||| || |||||||| || Sbjct 9856 GACAAAGAGGGGATACCACCAGATCAACAGAGGCTAATCTTTGCTGGGAAACAACTAGAG 9915 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || | | || |||||||| || ||||||||||| | || || || || Sbjct 9916 GATGGCCGAACGCTCGCTGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCTTG 9975 Query 23824 AGG 23826 ||| Sbjct 9976 AGG 9978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337965620303408