Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-23 seq2 104 2e-17 >seq5 Length=45943323 Score = 123 bits (136), Expect = 2e-23 Identities = 193/275 (70%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 || || |||||||| || | | |||| ||| || || || | || | || ||| Sbjct 37434402 TACACATGAGCATCCCCAATGACATGGATAAAATCACCGGGAACAAGATCACACACATGA 37434461 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 || | |||| | || || ||||||||| || |||||||| ||||| || || ||||| Sbjct 37434462 GCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATA 37434521 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 29845 ||| |||| | ||| || | ||| ||||||||||| || || |||||| ||||| Sbjct 37434522 TCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAACTGTGCG 37434581 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACAC 29905 ||||| |||||||||||||| ||||| || | ||| |||||||| || | Sbjct 37434582 AACATG---TGGCACGGAGGAAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCCGAT 37434638 Query 29906 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 | ||||| |||| || || || |||||| |||| Sbjct 37434639 AATATGATACGCCGATCATCAGGATTGTTCTTGAT 37434673 >seq2 Length=43799612 Score = 104 bits (114), Expect = 2e-17 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 29722 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAG 29781 ||||||||| | ||| | || || || ||||| ||| |||||||| || || || || Sbjct 41543387 GACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAGGCAATGTTAAAAGGTACACCAAG 41543446 Query 29782 CCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAA 29841 ||||| || |||| | ||| || | || |||||||||||||| | |||||||| Sbjct 41543447 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAAAA 41543506 Query 29842 CTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCA 29898 ||| | ||||| ||||| |||||||| ||||| || | ||| || ||||| Sbjct 41543507 CTGAGCAAACATG---TGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCA 41543563 Query 29899 GGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 || ||| || || |||| || || ||||||||| |||| Sbjct 41543564 AGCCGACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGAT 41543605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406110352582936