Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 6e-14 seq6 89.7 7e-13 >seq8 Length=29681327 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | || | || |||| ||| | || | || |||||||| |||||| Sbjct 8204239 CCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACCA 8204180 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || |||||||||||||| ||| ||| || ||||| |||| || || || || || Sbjct 8204179 TTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGAA 8204120 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | |||||||| || || ||| || | || || ||||||||| || || || Sbjct 8204119 ACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATATT 8204060 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 ||||| || || |||||| ||||| Sbjct 8204059 CCCTCAATGCTATCATCCTTCATG 8204036 >seq6 Length=53636577 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 ||||| | ||||||||||| || ||||| || || || || || |||||| || Sbjct 17376070 GCCCATTGGGCCTTCTTCTTGACGCAAGGGATGGTCTCGATCGCGCGGAAGAGATGGTCC 17376011 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 | || ||| | ||||| | ||||||||||| || || || ||||| |||||||| || Sbjct 17376010 CTCTCCTTGTTGTCTTTGATGTAAGTATCTAACAAGAGGCTGTACATCTCGGAGTGGATG 17375951 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAA 48478 || || || || ||||| || ||||| || Sbjct 17375950 TTCTCGATCGCGATCTGGAAGCCGTAGAA 17375922 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || || | ||| |||| | || |||||||| |||||| Sbjct 23786773 CCTCCTTGGTCGACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACCA 23786714 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||| |||||| || ||| || ||||||||| || || || || || || Sbjct 23786713 TTAGATTCTCCATTAGTGCCACGGATGTAACTTCCAGAAGCACGGATGTTGTGAACTGAA 23786654 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | ||||| || || || ||| || | || || |||||||||||| || || Sbjct 23786653 ACACCTATACCCCCAGCTGATTTACTAATAACCGCACACTCTTTCAATGTATCATATATT 23786594 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || || || || |||||| ||||| | ||||| ||||| Sbjct 23786593 CCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 23786553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694576096448640