Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq10676 704 0.0 seq3905 192 7e-44 seq3 163 4e-35 seq3442 95.1 2e-14 seq813 89.7 6e-13 seq6 89.7 6e-13 >seq10676 Length=153368 Score = 704 bits (780), Expect = 0.0 Identities = 756/997 (76%), Gaps = 2/997 (0%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | ||||| || || ||| | ||||| || || | || |||||||| | Sbjct 1327 CTTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1268 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTCGCTGCTCC 183314 ||||||||| || | ||| | ||||| | || || | || ||| | |||||||| Sbjct 1267 GATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1208 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 ||| || || || || || || || ||||| ||| |||| || || | || |||||||| Sbjct 1207 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1148 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434 || || || ||||| || ||||| |||| || ||||| | || || ||||| || Sbjct 1147 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGAT 1088 Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494 ||||||||| ||||| | ||||| ||||| || |||||||||||||| |||| | || Sbjct 1087 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 1028 Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554 | ||||| | |||| || || || |||||||||||||||||| | || ||| Sbjct 1027 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 968 Query 183555 TCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGC 183614 ||| ||||||||||||||||| |||||| ||| || |||||||| ||||| || || Sbjct 967 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 908 Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 ||| ||| || |||| || | |||||||| |||| |||||||||||| || || || Sbjct 907 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 848 Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734 | ||| || || |||| |||| |||| ||||| || ||||||||||| || |||||||| Sbjct 847 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 788 Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794 || |||||| | ||||| |||||||| ||||| || || || || ||||| ||||| || Sbjct 787 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 728 Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATG 183853 |||| |||| ||||| | | | | || | |||||||| || ||| || || | | Sbjct 727 TTCTTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 669 Query 183854 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTG 183913 | |||| ||||||||||||||||| || ||||||||||| |||||||| || || |||| Sbjct 668 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 609 Query 183914 GTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTG 183973 | || |||||||||| |||||| || ||||||||||||||| | || |||||| | | Sbjct 608 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 549 Query 183974 CTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTA 184033 | |||||||| || || || || |||||||||||| | ||| |||| |||||||| || | Sbjct 548 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 489 Query 184034 ACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACA 184093 |||| |||||||| || |||||||| || | ||||| ||||||| ||||| | || | Sbjct 488 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 429 Query 184094 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATG 184153 | ||||| || || | ||||||||| ||||| |||||||| ||||| || ||||||| Sbjct 428 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 369 Query 184154 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGTC 184190 |||||||||||||||| ||||| ||||||| |||||| Sbjct 368 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 332 Score = 497 bits (550), Expect = 1e-135 Identities = 714/1004 (71%), Gaps = 2/1004 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | |||||||| || ||||| || |||||||| || | || | Sbjct 31990 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32049 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | || | || || ||| | || || ||||| ||||| || | Sbjct 32050 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32109 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 ||||||| || || ||||| ||| || | || ||| |||||| | || || |||| Sbjct 32110 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 32169 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || ||||||||| | | | | |||||| | | |||| ||||||||||| | | Sbjct 32170 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 32229 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 |||||||| | | || |||| ||| | || || || ||| |||||| || ||||||| Sbjct 32230 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 32289 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGT 186329 | || || || | |||||||| ||| | || || |||||| | ||| ||| | | Sbjct 32290 GTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 32349 Query 186330 ATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTC 186389 | || || || ||||| || || || |||||||| || ||||| |||||| ||| || Sbjct 32350 -TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTT 32408 Query 186390 CTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCA 186449 || || || || || || || || |||||||| || || ||||| || || || Sbjct 32409 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 32468 Query 186450 ATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 186509 || ||| ||||| | | || ||||||| || || || ||||| ||||| ||||| || Sbjct 32469 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 32528 Query 186510 ATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACT 186569 |||||||| || || ||| | || || | |||||| | | || || ||||||| |||| Sbjct 32529 ATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACT 32588 Query 186570 GTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACG 186629 |||||||||||| | | ||||||||| || ||||| |||||| || || | | Sbjct 32589 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 32648 Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689 || |||| |||||||| ||||| |||||||| || ||| | || |||||||| ||||| Sbjct 32649 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 32708 Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATG 186749 || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | Sbjct 32709 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 32768 Query 186750 GGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGAC 186809 ||| | |||| | | |||| | | ||||| ||| | ||||| ||||| |||||| Sbjct 32769 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 32828 Query 186810 TTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAG 186869 || || ||||| | | ||||| || ||||| || || ||||| |||||||| || Sbjct 32829 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 32888 Query 186870 AATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAA 186929 ||||| || || || |||||| | || || |||||||| | ||||| || |||||| Sbjct 32889 AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 32948 Query 186930 AACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 ||| || |||| ||||| || || | ||| | || |||||||| Sbjct 32949 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 32992 >seq3905 Length=4339 Score = 192 bits (212), Expect = 7e-44 Identities = 293/415 (71%), Gaps = 2/415 (0%) Strand=Plus/Plus Query 186246 CTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAG 186305 || ||| |||||| || |||||||| || || || | |||||||| ||| | || || Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 186306 TTTGAAATCAGTCG-TCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCC 186364 |||||| | ||| ||| | | | || || || ||||| || || || | |||||| Sbjct 1216 TTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTTTGGTCC 1274 Query 186365 TATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTT 186424 || ||||| |||||| ||| || || || || || || || || || |||||||| Sbjct 1275 AATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTT 1334 Query 186425 CGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCA 186484 || || ||||| || || | || ||| ||||| | | || ||||||| || || Sbjct 1335 TGCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCA 1394 Query 186485 CAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCT 186544 || |||| ||||| ||||| || |||||||| || || ||| | || || | ||||| Sbjct 1395 TAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCT 1454 Query 186545 GCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGC 186604 | | | || || ||||||| |||||||||||||||| | | ||||||||| || || Sbjct 1455 GTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGC 1514 Query 186605 AAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTC 186659 ||| |||||| || || | || |||| |||||||| ||||| |||||| Sbjct 1515 AAATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGTC 1569 >seq3 Length=29132933 Score = 163 bits (180), Expect = 4e-35 Identities = 356/528 (67%), Gaps = 4/528 (1%) Strand=Plus/Plus Query 185991 GACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTTCCCACTGCTTATATGGCA 186050 ||||||||||| ||||| || |||||||| || | || ||||| ||| ||| | | Sbjct 2931774 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCTCT 2931833 Query 186051 ATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCG 186110 | || || ||| | || || ||||| ||||| || |||||||| || || ||||| Sbjct 2931834 TTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGGCT 2931893 Query 186111 TCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCT 186170 ||| || | || ||| | | || | || | ||||| || ||||||||| | | Sbjct 2931894 AGTTCCTATTTAGAAGGTTGCAGTCTTTTAACCGATGCAGTTTCTACTCCTGCTAATAGT 2931953 Query 186171 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGG 186230 | |||||| || || | || ||||||||| | ||||||||| | | || ||| Sbjct 2931954 TTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTCGTTGG 2932012 Query 186231 TTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGT 186290 | ||| | | || || ||| |||||| || |||||| | || || | | ||| || Sbjct 2932013 TGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATAAGT 2932072 Query 186291 TTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGTATCCGTCCATACAATGCCAT 186349 || ||| | || || |||||| | ||| ||| || | || || || ||||| || Sbjct 2932073 TTTATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGCGACCTTATAATGCAAT 2932131 Query 186350 TGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACA 186409 | || |||||||| || ||||| ||| || ||| || || || || |||| || || Sbjct 2932132 AACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCCTC-AGGTCA 2932190 Query 186410 GTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTT 186469 || |||||||| || || ||||| || || || || ||| | ||| | | || Sbjct 2932191 ATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCATCTT 2932250 Query 186470 CCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGG 186517 ||||||| || || || |||| ||||| || | || |||||||| Sbjct 2932251 TTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGG 2932298 >seq3442 Length=4740 Score = 95.1 bits (104), Expect = 2e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 183866 GTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCT 183925 |||||||| |||| || ||||||||||| |||||||| || || ||||| || |||||| Sbjct 4277 GTCAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCT 4336 Query 183926 TCCAGTATGCTTCGTTTAACAATTCTCGTT 183955 |||| |||||| || ||||||||||||| Sbjct 4337 TCCAATATGCTAGTTTCAACAATTCTCGTT 4366 >seq813 Length=20179 Score = 89.7 bits (98), Expect = 6e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 184127 GCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTG 184186 |||||||||| ||||| || ||||||||||||||||||||||| ||||| ||||||| || Sbjct 10708 GCATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTG 10649 Query 184187 AGTC 184190 |||| Sbjct 10648 AGTC 10645 >seq6 Length=53636577 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 170989 CTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGT 171048 |||| || ||||| || | ||||||||||||||||| ||| |||| ||| || || | Sbjct 43943737 CTGACGACCAATACATATTGGATGCTGCTGAAGAAGCTGGAGTTGACTTGCCTTACTCTT 43943678 Query 171049 GTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAAT 171108 | | || ||||| ||||| ||||| || || || || |||| ||| ||||| || | Sbjct 43943677 GCAGAGCCGGTGCCTGTTCCACCTGCGCCGGTAAGATCGAGAAAGGTCAAGTTGACCAGT 43943618 Query 171109 CCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTT 171150 | ||| || || ||||| ||| |||| |||| ||||| Sbjct 43943617 CTGATGGTTCGTTTCTTGAGGATCATCACTTTGAGAAAGGTT 43943576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621987384705120