Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq10676 618 5e-172 seq3905 223 4e-53 seq3 167 3e-36 seq7646 98.7 1e-15 seq813 89.7 6e-13 seq3442 86.0 7e-12 seq69 84.2 3e-11 >seq10676 Length=153368 Score = 618 bits (684), Expect = 5e-172 Identities = 734/995 (74%), Gaps = 0/995 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||||||| |||| ||||| |||||||| || | || ||||| || || || Sbjct 1326 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1267 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 ||||| || | | || | ||||| | ||| || ||||| ||||| | |||||| Sbjct 1266 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1207 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || ||||| ||| |||| ||||| | || || ||||| Sbjct 1206 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1147 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || || || ||||| || | || |||| || || ||| | || || ||||| ||| Sbjct 1146 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 1087 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| ||| | ||||||||| | |||||||||||||||| |||| |||| Sbjct 1086 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1027 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | ||||| | | || | | ||| |||||||||||||||||| | | ||| Sbjct 1026 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 967 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 ||||||||||| |||||||| |||||| || || ||||| ||||| || || | ||| Sbjct 966 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 907 Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831 |||||| || ||||||| |||| ||||| || ||||| | ||||||||| || ||| Sbjct 906 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 847 Query 169832 TCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCC 169891 || || || || |||| ||| | || ||||| |||||||||||||| || |||||||| Sbjct 846 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 787 Query 169892 TTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951 || |||||| | ||||| || || || || || || || || ||||| || ||||| ||| Sbjct 786 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 727 Query 169952 AGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGT 170011 | || ||||| ||| | || | |||||||| || || || || || | || Sbjct 726 TCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGG 667 Query 170012 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGT 170071 |||| ||||||||||||||||| || |||||||| || || ||||||||||| || || Sbjct 666 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 607 Query 170072 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 170131 || ||||||||||||| ||| |||||||| || ||||| | || |||||| | || Sbjct 606 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 547 Query 170132 GCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAAC 170191 || ||||| || || || || ||||| || ||| | ||| | || ||||| |||||| Sbjct 546 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 487 Query 170192 CTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACC 170251 || || |||||||| |||||||| || | | ||| |||| || ||||| | || || Sbjct 486 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 427 Query 170252 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCT 170311 ||||| || || | ||||||||| ||||| |||||||| ||||| || ||||||||| Sbjct 426 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 367 Query 170312 CACAACTTCCCTCTCGACCTCGCTGCTGCTGAGTC 170346 |||||||||||||| ||||| ||||||| |||||| Sbjct 366 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 332 Score = 518 bits (574), Expect = 4e-142 Identities = 722/1009 (72%), Gaps = 2/1009 (0%) Strand=Plus/Plus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 ||||||||||| | | || || || || ||||| || |||||||| || | || | Sbjct 31990 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32049 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| ||| ||| | || | || || ||| | || || || || ||||| || | Sbjct 32050 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32109 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTG 170784 |||| || || ||| | || ||||| || | |||||| ||||| | || || || | Sbjct 32110 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 32169 Query 170785 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 170844 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 32170 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 32229 Query 170845 AGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 170904 | || ||||| || |||| ||| | || || || ||| |||||| || ||||||| Sbjct 32230 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 32289 Query 170905 GAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGG 170963 | || || || | |||||||| ||| | || || |||||| | ||| ||| || Sbjct 32290 GTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAA 32348 Query 170964 ATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTC 171023 | |||| || ||||||||||| ||||||||||| || ||||| ||||| || || Sbjct 32349 TTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTT 32408 Query 171024 CTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCA 171083 || || ||||| || || || || |||||||||| || ||| ||||| || || || Sbjct 32409 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 32468 Query 171084 ATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCAT 171143 || || || ||| | ||||| | ||||| || || || |||||| |||| ||||||||| Sbjct 32469 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 32528 Query 171144 ATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACA 171203 |||||||| || || ||| | || |||| || || | | || |||||||||| ||| Sbjct 32529 ATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACT 32588 Query 171204 GTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACG 171263 ||||| |||||||| | ||||||||||||| ||||| || || || ||| || | Sbjct 32589 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 32648 Query 171264 ACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTT 171323 ||||| | ||||| || ||||| |||||||| ||||| || || ||||| || || ||| Sbjct 32649 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 32708 Query 171324 GGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATG 171383 || | || || |||||| |||||||| |||||||||||| | ||||| || || | Sbjct 32709 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 32768 Query 171384 GGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGAT 171443 ||| | ||| | ||| ||| || | | ||||| ||| | || || | || ||||| Sbjct 32769 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 32828 Query 171444 TTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAG 171503 ||||| ||||| || | ||||| |||||||| || || ||||| |||||||| || Sbjct 32829 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 32888 Query 171504 AACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAA 171563 || || || || || |||||| |||| || |||||||| | ||| || || |||||| Sbjct 32889 AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 32948 Query 171564 AACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||| || | ||||| ||||| |||||||| ||||| || || |||| || Sbjct 32949 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 32997 >seq3905 Length=4339 Score = 223 bits (246), Expect = 4e-53 Identities = 300/415 (72%), Gaps = 2/415 (0%) Strand=Plus/Plus Query 170880 CTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAG 170939 || ||| |||||| || |||||||| || || || | |||||||| ||| | || || Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 170940 TTTGAAATCAGTCG-TCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCC 170998 |||||| | ||| ||| || | |||| || ||||||||||| |||| |||||| Sbjct 1216 TTTGAACTTGCTCGATCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTTTGGTCC 1274 Query 170999 TATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTT 171058 || ||||| ||||| || || || || ||||| || || || || |||||||||| Sbjct 1275 AATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTT 1334 Query 171059 CGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCA 171118 || ||| ||||| || || | || || || ||| | ||||| | ||||| || || Sbjct 1335 TGCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCA 1394 Query 171119 CAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATT 171178 || |||| | |||| ||||||||||||||||| || || ||| | || |||| || | Sbjct 1395 TAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCT 1454 Query 171179 GCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGC 171238 | | | || |||||||||| ||| ||||| |||||||| | ||||||||||||| || Sbjct 1455 GTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGC 1514 Query 171239 AAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTC 171293 ||| || || || ||| || ||||| | ||||| || ||||| |||||| Sbjct 1515 AAATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGTC 1569 >seq3 Length=29132933 Score = 167 bits (184), Expect = 3e-36 Identities = 357/528 (68%), Gaps = 4/528 (1%) Strand=Plus/Plus Query 170625 GATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCA 170684 || || ||||| ||||| || |||||||| || | || ||||| ||| ||| | | Sbjct 2931774 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCTCT 2931833 Query 170685 ATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTTGGTACACCCACGGACTTGCA 170744 | || || ||| | || || || || ||||| || ||||| || || ||| | || Sbjct 2931834 TTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGGCT 2931893 Query 170745 AGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCT 170804 ||||| || | |||||| | | | | || | || || || || |||||| || | Sbjct 2931894 AGTTCCTATTTAGAAGGTTGCAGTCTTTTAACCGATGCAGTTTCTACTCCTGCTAATAGT 2931953 Query 170805 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGG 170864 | |||||| || || | || ||||||||| | || || ||||| || ||| Sbjct 2931954 TTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTCGTTGG 2932012 Query 170865 TTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGT 170924 | ||| | | || || ||| |||||| || |||||| | || || | | ||| || Sbjct 2932013 TGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATAAGT 2932072 Query 170925 TTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGGATTAGACCGTACAATGCAAT 170983 || ||| | || || |||||| | ||| ||| || | |||| || |||||||| Sbjct 2932073 TTTATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGCGACCTTATAATGCAAT 2932131 Query 170984 CGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCA 171043 | ||||||||||| || ||||| ||| | || || || || ||||||| || || Sbjct 2932132 AACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCCTCA-GGTCA 2932190 Query 171044 GTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTT 171103 || |||||||||| |||||| ||||| || || || || || || ||| | |||| Sbjct 2932191 ATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCATCTT 2932250 Query 171104 CCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGG 171151 | ||||| || || || |||| | |||| || ||||||||||||| Sbjct 2932251 TTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGG 2932298 >seq7646 Length=5112 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507 ||| |||| ||||| || |||||||| ||| | || | |||||| |||||||| || Sbjct 4416 TACGTCCTCGACGCAGCGGAGGAAGCTGGTATCGATCTGCCCTACTCATGCCGTGCTGGA 4475 Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567 |||| ||| ||||| || ||| || |||||||| || | || |||| || || | Sbjct 4476 TCTTGCTCGAGCTGCGCCGGGAAAGTCGTCTCTGGCTCCATTGACCAAACGGACCAGAGC 4535 Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAAC 167626 ||| | ||||| || || || |||||| | | |||||||||||| | || ||||| Sbjct 4536 TTCTTAGACGACGAACAGATGAGCGAAGGGTATGTCCTCACCTGTGTGGCTTACCCAAC 4594 >seq813 Length=20179 Score = 89.7 bits (98), Expect = 6e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 170283 GCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCTGCTG 170342 |||||||||| ||||| || ||||||||||||||||||||||| ||||| ||||||| || Sbjct 10708 GCATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTG 10649 Query 170343 AGTC 170346 |||| Sbjct 10648 AGTC 10645 >seq3442 Length=4740 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 170022 GTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCT 170081 |||||||| |||| || |||||||| || || ||||||||||| || || || |||||| Sbjct 4277 GTCAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCT 4336 Query 170082 TCCAATACGCTTCCTTCAACAACTCCCGTT 170111 ||||||| ||| |||||||| || |||| Sbjct 4337 TCCAATATGCTAGTTTCAACAATTCTCGTT 4366 >seq69 Length=186703 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507 ||| |||| ||||| ||||||||||| || | ||| | ||||| |||||||| || Sbjct 41230 TACGTCCTCGACGCTGCTGAGGAAGCAGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 41289 Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567 |||| ||| || || || ||| | | ||||| | || || || || || Sbjct 41290 TCTTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 41349 Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAAC 167626 ||||| || ||||| || ||||| ||||| ||| ||||||| |||| | | ||||| || Sbjct 41350 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTAC 41408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592119371123520