Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq940 132 1e-25 seq976 104 5e-17 seq950 104 5e-17 seq948 104 5e-17 seq945 104 5e-17 seq941 104 5e-17 seq562 104 5e-17 seq426 104 5e-17 >seq940 Length=8971605 Score = 132 bits (146), Expect = 1e-25 Identities = 574/883 (65%), Gaps = 29/883 (3%) Strand=Plus/Plus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| ||| ||||| ||||| || | || ||||| ||||||||||| || | ||| Sbjct 8502092 TCTGCATGTTTCCAATTCAATACCCTCAGATTTGGGAGATGTACAAGAAAGCAGAGGCCT 8502151 Query 229811 CTTTCTGGACCACTGAGGAAGTT--CCTCTGAACGCAG-ACGT-CGTCGACTGGCGTGAG 229866 | |||||||| | ||||| || ||||| | ||| || | |||| | ||| || Sbjct 8502152 CCTTCTGGACTGCCGAGGAGGTCGACCTCT---CCCAGGACATGCGTCAA-TGG---GAA 8502204 Query 229867 AAACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCC 229926 || |||| ||||| ||||| || || | | | | || | |||||||| ||| Sbjct 8502205 AACCTCACCCCTGACGAGCGTCACTTTATTAGTCGCGTTCTGGCATTTTTCGCCMCCTCA 8502264 Query 229927 GATGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGA 229985 ||||| || || |||| ||||| || | | | || | ||||| ||| | || Sbjct 8502265 GATGGCATCGTTTTGGAGAATCTCGCCGGACGA-TTCATGAAAGAAGTTCAGGTCTCCGA 8502323 Query 229986 GGCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGC 230045 ||| || || || | | ||||| || |||| || ||||| || ||| Sbjct 8502324 GGCRCGTGCCTTCTACGGCTTCCAAATTGCCATCGAAAACATTCATTCCGAGATGTATAG 8502383 Query 230046 TCTGCTTATCGACGCGCTTATTTCCGACG-AG-CAAGAACGGAACGAGCTTTTTGATGCC 230103 || | |||| | ||| ||| || | |||| | || ||| ||| | || Sbjct 8502384 RCTCTTGCTCGAGTCCTARATTAAGGACCCAGACGAGAA--GCACAGGCTCTTTCACGCA 8502441 Query 230104 ATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCT 230163 || || | ||| || ||| | || ||||| |||||||| | |||| | || Sbjct 8502442 ATGGAGACCATACCTTGCGTTGAAAAGAAGGCCAAGTGGGCCCTCCGATGGATCGACGGC 8502501 Query 230164 GGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCC 230223 || |||| ||||| |||||| | ||||||| | || || || || || | || || Sbjct 8502502 GGAGAATCATTTGCGGAGCGTTTGGTCGCCTTTGCTTGCGTCGAGGGGATATTCTTCTCG 8502561 Query 230224 GGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTG 230283 |||||||| ||||| || |||||| | ||| || | ||||| || | | Sbjct 8502562 GGGAGTTTTTGCGCGATATTTTGGTTAAAGAAACGCGGGCTAATGCCCGGTTTGACCTTC 8502621 Query 230284 TCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTAT 230343 || |||||||| ||| || || |||||||||||| | |||| || ||||| | | Sbjct 8502622 TCGAACGAGTTAATCTCGCGAGATGAGGGTCTCCATTGTGACTTCG-CGTGCTTAC-TCT 8502679 Query 230344 TCAAAGCTCCAGAACAAGCTACCATTCGAG-ACGG--TCAAACAAATCATTACAGAAGCA 230400 || |||| || | | |||| || | ||| | |||| || | || ||| Sbjct 8502680 ACAGT-CTCCTGAGGATGAAGTTGAGCGAGGACCGAATCAGAGGAATCGTTGCGGATGCA 8502738 Query 230401 GTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAA 230459 || || | || | ||| ||| | || ||||| | || || ||| || | |||||||| Sbjct 8502739 GTGGATATAGAGAGGGAATTCGTATGCGACGCGCTGCCGTG-CGCGCTGGTGGGCATGAA 8502797 Query 230460 CGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGG 230519 || ||| || ||| | ||||||| ||||| ||||| ||| | | | | || | || Sbjct 8502798 CGGTGACCTAATGAGTAAGTACATTGAATTTGTAGCAGACAGATTACTCGGCGCTTTAGG 8502857 Query 230520 TTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTT-C 230578 |||| ||| |||| || | ||||||| || | | |||||||| ||| |||| | Sbjct 8502858 CTACGGTAAAATGTATAATGTTCAGAACCCGTTCGATTGGATGGAGCTGATTA-GCTTGC 8502916 Query 230579 AAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCA 230621 | |||||||| ||||||||||| ||| | ||| | || ||||| Sbjct 8502917 AGGGGAAGACGAACTTCTTCGAGAAGAGGGTCGGAGAATATCA 8502959 Score = 96.9 bits (106), Expect = 7e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 165704 ACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGT 165763 |||| ||||||||||| ||||||||||||| || || || ||||||| |||||||||| | Sbjct 7261399 ACGCATGCCCGTCTAGGTCAGTCGGTAGAGGGCAAGGCTCTTAATCTTGTGGTCGTGGAT 7261458 Query 165764 TCGAGCCCCACGATGGGC 165781 ||||| |||||| ||||| Sbjct 7261459 TCGAGTCCCACGGTGGGC 7261476 >seq976 Length=16402300 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 6320953 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6320894 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6320893 CCCACGGTGGGC 6320882 >seq950 Length=8950308 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 7387961 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7388020 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7388021 CCCACGGTGGGC 7388032 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 8369093 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8369034 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8369033 CCCACGGTGGGC 8369022 >seq948 Length=7662486 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 7063507 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7063448 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7063447 CCCACGGTGGGC 7063436 >seq945 Length=13627481 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1622910 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1622851 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1622850 CCCACGGTGGGC 1622839 >seq941 Length=10723577 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 4960945 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4961004 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4961005 CCCACGGTGGGC 4961016 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 7337431 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7337490 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7337491 CCCACGGTGGGC 7337502 >seq562 Length=5960891 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 4710297 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4710238 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4710237 CCCACGGTGGGC 4710226 >seq426 Length=283601 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 46200 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 46141 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 46140 CCCACGGTGGGC 46129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057810731250770