Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq946 89.7 4e-13 seq977 86.0 5e-12 >seq946 Length=5553863 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || ||||| || ||||| || ||||| || || ||||||||| Sbjct 333560 GAMAAAGAAGGTATTCCTCCTGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 333501 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||| | ||| ||||||| || ||||| ||||| ||||| || |||||| |||| || Sbjct 333500 GATGGCCGTACTTTGGCCGACTATAATATCCAAAAAGAATCAACACTTCACTTGGTTTT 333442 >seq977 Length=5547227 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 25111 TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTG 25170 ||||| ||| ||| || || |||||| | || ||||| |||||| | ||||||| Sbjct 916695 TCAAGGCAAAGATTCAAGACAAGGAAGGTRTCCCACCTGATCAGCAAAGATTGATCTTTG 916754 Query 25171 CGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTA 25230 | || |||||| |||| ||| | |||| | || || ||||| ||||||||||| || | Sbjct 916755 CCGGGAAACAACTGGAGGATGCTCGAACTCTTGCTGACTACAACATTCAAAAGGAGTCCA 916814 Query 25231 CTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||| || | || || ||| | || || || Sbjct 916815 CTCTCCATCTCGTCTTGCGACTTCGGGGTGG 916845 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| | ||||| | || ||||| || ||||| || || | Sbjct 1049308 ATGCAAATATTTGTTAAAACTCTAACCGGCAAGACGATTACTCTTGAGGTTGAGGGTTCT 1049367 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || ||||| |||||| ||||| || || | || || || Sbjct 1049368 GACACGATTGACAATGTCAAGGCCAAAATTCAGGATAAGGAGGGGATTCCTCCGGACCAG 1049427 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||| |||||||| || || || ||||| || | |||| | |||||||| ||| Sbjct 1049428 CAGAGACTCATCTTTGCTGGGAAGCAGTTGGAGGACGGCCGAACTCTTGCCGATTATAAT 1049487 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||||||||||| || |||||||| |||| || Sbjct 1049488 ATTCAAAAGGAGTCGACTCTTCATCTGGTCTT 1049519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||| | ||| | || || | || ||||| ||||| || ||| ||| | | Sbjct 917074 AATGCAAGTCTTCGTTAAGACCCTTACAGGCAAGACCATCACTCTTGAAGTTGAAAGCTC 917133 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | || |||| ||||||| || || || || | || |||||| Sbjct 917134 AGATACAATTGACAATGTCAAAGCAAAAATTCAGGACAAGGAGGGGATTCCTCCAGATCA 917193 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| | || | |||||| |||||| |||| ||| || | || |||||||| Sbjct 917194 GCAAAGATTGATATCTGCGGGGAAACAACTGGAGGATGGTCGTACCCTTGCTGATTACAA 917253 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 ||| || ||||| ||||| |||||| | || || ||| | || || ||| Sbjct 917254 TATCCAGAAGGAGTCTACACTTCACCTTGTTTTGCGACTTCGTGGTGGG 917302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410791898552306