Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq977 118 2e-21 seq946 105 1e-17 seq978 98.7 2e-15 seq937 89.7 8e-13 >seq977 Length=5547227 Score = 118 bits (130), Expect = 2e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || ||||| ||||| || || ||| | ||| |||| | | Sbjct 1049308 ATGCAAATATTTGTTAAAACTCTAACCGGCAAGACGATTACTCTTGAGGTTGAGGGTTCT 1049367 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||| ||||| || || || || || || || Sbjct 1049368 GACACGATTGACAATGTCAAGGCCAAAATTCAGGATAAGGAGGGGATTCCTCCGGACCAG 1049427 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || || ||||| || || || || ||||| | ||||| | | ||||||||| Sbjct 1049428 CAGAGACTCATCTTTGCTGGGAAGCAGTTGGAGGACGGCCGAACTCTTGCCGATTATAAT 1049487 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| || || ||| | ||| |||| || | | || |||||||| ||| || Sbjct 1049488 ATTCAAAAGGAGTCGACTCTTCATCTGGTCTTGAGGCTCCGTGGTGGTATGCAAATTT 1049545 Score = 116 bits (128), Expect = 6e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||| ||| ||| | ||||| | |||||||| || || || | ||| |||| Sbjct 916846 AATGCRAATTTTTGTTAAGACCATCACAGGCAAGACCATCACGCTTGAGGTTGAGAGTTC 916905 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || |||| || || |||||||| || |||||||| ||||||||||| Sbjct 916906 TGACACCATCGATAATGCCAAGGCAAAGATTCAAGACAAGGAAGGTATCCCACCTGATCA 916965 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | || ||||| || |||||| | |||||| ||||||| | | || || || Sbjct 916966 GCAAAGATTGATCTTTGCTGGGAAACAACTGGAGGATGGTCGAACCCTTGCTGACTACAA 917025 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || || || ||| | || || || | || ||||| || Sbjct 917026 CATTCAAAAAGAGTCCACCTTACATCTTGTCTTGCGACTTCGTGGTGGAAT 917076 Score = 109 bits (120), Expect = 8e-19 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | |||| || ||||||| || || || | ||| || | Sbjct 916620 AATGCAAATATTTGTTWAGACCCT--CAGGCAAGACCATCACGCTTGAGGTTRAGAGTTC 916677 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || |||||||| || |||||| | ||||||||||| Sbjct 916678 TGACACCATTGATAACGTCAAGGCAAAGATTCAAGACAAGGAAGGTRTCCCACCTGATCA 916737 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | || ||||| || |||||| | |||||| |||||| | | || || || Sbjct 916738 GCAAAGATTGATCTTTGCCGGGAAACAACTGGAGGATGCTCGAACTCTTGCTGACTACAA 916797 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||| | ||| | || || || | || ||||| || Sbjct 916798 CATTCAAAAGGAGTCCACTCTCCATCTCGTCTTGCGACTTCGGGGTGGAAT 916848 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || ||||| || || | ||| ||||| | Sbjct 1026073 ATGCAGATCTTTGTCAAAACCCTCACCGGTAAAACCATCACACTTGAGGTTGAAAGTTCT 1026014 Query 124599 GATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || ||| || ||||| ||||| ||||| || || || || || Sbjct 1026013 GATACTATTGATAATGTCAAGACA-AAGATTCAGGATAAGGAAGGGATCCCTCCGGACCA 1025955 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| || || || || || || | ||||| | | |||||||| Sbjct 1025954 ACAAAGATTGATCTTTGCTGGGAAGCAGTTGGAAGACGGCCGAACCCTGGCGGATTATAA 1025895 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || || | ||| |||| | ||| || | ||||| || Sbjct 1025894 CATTCAAAAAGAGTCCACGCTTCATCTGGTGCTGCGTCTAAGGGGTGGGAT 1025844 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | |||||| | || || || || || || | ||| | || ||| Sbjct 1049764 ATGCAGATTTTTGTGAAGACATTGACTGGGAAGACAATTACACTGGAGGTGGAGAGCTC- 1049822 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| | ||| || ||||| || || || || || || |||||||| Sbjct 1049823 TGATACCATAGACAATGTGAAAGCCAAGATTCAGGACAAGGAGGGGATCCCCCCTGATCA 1049882 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||| || || ||||| || | |||||| | || || ||| ||||| || Sbjct 1049883 ACAGAGGCTTATCTTCGCCGGAAAGCAGCTTGAGGATGGGCGCACTCTAGTCGATTACAA 1049942 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || || || || || ||||| | || | ||| | ||||| ||| Sbjct 1049943 TATCCAGAAGGAGTCCACCCTGCATCTTGTCCTTCGTCTTCGAGGCGGT 1049991 Score = 89.7 bits (98), Expect = 8e-13 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 124533 AATACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA- 124591 ||||||||||| || || | |||| ||||| ||||| || ||||| | ||| |||| Sbjct 4465588 AATACAATGCAGATCTTCGTGAAGAACCTAACTGGCAAGACCGTAACTCTCGAGGTTGAG 4465647 Query 124592 AGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACC 124651 || | ||||| || ||| | || ||||| |||||||| || || | || || Sbjct 4465648 AGTTCA-GATACCATCGATAACGTGAAGGCCAAAATCCAAGATAAGGAGGGCAKCCCTCC 4465706 Query 124652 TGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGA 124711 ||||| || | ||||| || | || | ||| | ||||| | || ||| | | || Sbjct 4465707 GGATCACCAGCGCCTTATCTTCTCCGGGATGCAACTGGAGGACGGACGTACACTTGCCGA 4465766 Query 124712 TTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| ||||| ||||| || || | ||| |||| | || | || |||||||| Sbjct 4465767 TTATAACATTCAGAAAGAGTCCACCCTCCATCTGGTCCTGCGCCTCCGTGGTGGTAT 4465823 >seq946 Length=5553863 Score = 105 bits (116), Expect = 1e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 124628 TCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 ||| || ||||||||||| || |||||||| || || || |||||||| || || ||||| Sbjct 333564 TCAGGAMAAAGAAGGTATTCCTCCTGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATT 333505 Query 124688 AGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||| | || || || | || |||||||| |||||||||||||| | || ||||| Sbjct 333504 GGAAGATGGCCGTACTTTGGCCGACTATAATATCCAAAAAGAATCAACACTTCACTTGGT 333445 Query 124748 TTT 124750 ||| Sbjct 333444 TTT 333442 >seq978 Length=8767375 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| || || || || ||||| || | || |||| ||| Sbjct 3246530 ATGCAAATATTTGTTAAGACCCTCACCGGAAAGACTATCACCCTTGAAGTTGAGAGC-TC 3246472 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| || || || ||||| ||||| || || || || || Sbjct 3246471 CGACACCATTGACAATGTCAAAGCCAAGATACAGGATAAGGAAGGAATTCCCCCAGACCA 3246412 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| ||||| ||| | ||||| |||| || ||| || || || Sbjct 3246411 GCAGAGGCTGATCTTTGCCGGAAAGCAACTCGAGGACGGTCGCACTCTAGCCGACTACAA 3246352 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | || ||||| | ||| | |||||||||| Sbjct 3246351 CATCCAGAAGGAATCCACCCTCCACTTGGTCCTCCGTCTGAGAGGTGGTAT 3246301 >seq937 Length=9237706 Score = 89.7 bits (98), Expect = 8e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || ||||| || || || ||||| | ||| | ||| | Sbjct 195871 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTGGAGGTCGAATCCTCC 195930 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || |||||||| ||||| || ||||||||||| Sbjct 195931 GACACCATTGACAATGTCAAGGCTAAGATCCAAGATAAGGAAGGCATCCCACCTGATCAG 195990 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||||| || || || || || | |||||| | |||| ||| |||||||| Sbjct 195991 CAGCGGCTTATCTTCGCCGGTAAGCAGCTCGAGGATGGCAGAACCCTAGCGGATTATAAC 196050 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || || || || || |||| |||| | || || || ||||| Sbjct 196051 ATCCAGAAGGAGTCTACCCTGCACCTGGTCCTCCGCTTGCGTGGTGG 196097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755446755107200