Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq977 116 4e-21 seq964 116 4e-21 seq978 82.4 9e-11 seq937 82.4 9e-11 >seq977 Length=5547227 Score = 116 bits (128), Expect = 4e-21 Identities = 148/197 (75%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||||||||| ||||| || ||||| || |||| || | |||||| |||||||| Sbjct 1026338 CTCCTTTTGAATATTATAATCGGCAAGAGTACGGCCGTCCTCCAACTGCTTCCCAGCGAA 1026397 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||||| ||||||||| | || | || |||||| | | ||| |||| | |||| || Sbjct 1026398 GATGAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTAT-CTTGAATTTTAGCCTTGA-CG 1026455 Query 43111 TCG-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | ||||||| ||| || || || | || || || ||||| ||||| || Sbjct 1026456 TTGTCAATCGTGTCGGAACTC---TCAACCTCAAGAGTAATCGTCTTGCCGGTTAGAGTT 1026512 Query 43167 TTTACAAAGATTTGCAT 43183 || |||||||| ||||| Sbjct 1026513 TTGACAAAGATCTGCAT 1026529 Score = 104 bits (114), Expect = 3e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| |||| ||| | || ||||||||||||||| ||||| || ||||| || |||| Sbjct 1049520 CAAGACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCAAGAGTTCGGCCGTC 1049461 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || | |||||| ||||| || ||||||| ||||||||| | || | | |||||| || Sbjct 1049460 CTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAGGAATCCCCTCCTTATC 1049401 Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| |||| | |||| | | | |||||| || || || | || || | Sbjct 1049400 C-TGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCAACCTCAAGAGTAATCG 1049342 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| ||||| || || ||||| |||||||| Sbjct 1049341 TCTTGCCGGTTAGAGTTTTAACAAATATTTGCAT 1049308 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| || ||||| || || ||||| |||| || || || || || ||||| Sbjct 1026566 CTCCTTCTGAATGTTATAATCGGCTAGGGTCCGACCGTCCTCGAGTTGTTTGCCGGCGAA 1026625 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || |||||||| |||| || | || ||||||||| ||| || |||| | Sbjct 1026626 GATTAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATT 1026685 Query 43112 CGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | || ||| ||| || || |||| ||||||||||| || ||||| || || Sbjct 1026686 ATCGATGGTATCGGAACTC---TCGACCTCGAGAGTGATGGTTTTACCGGTTAGGGTTTT 1026742 Query 43169 TACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 1026743 CACAAAGATCTGCAT 1026757 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || |||| ||||| ||||| ||| | ||| ||| |||||||| || ||||| ||| Sbjct 1025847 CCACCCCTTAGACGCAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCC 1025906 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || | |||||| ||||| || || | || || ||||| | || Sbjct 1025907 AGGGTTCGGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGG 1025966 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| ||| ||| | ||||| |||| | | | || || ||| || Sbjct 1025967 ATCCCTTCCTTATCC-TGAATCTTTGTCTTGACATTATCAATAGTATCAGAACTTTCAAC 1026025 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || || || || |||||||| ||||| Sbjct 1026026 CTCAAGTGTGATGGTTTTACCGGTGAGGGTTTTGACAAAGATCTGCAT 1026073 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | || | ||| |||||| || |||||||||||||| || || || | Sbjct 917289 CGCAAAACAAGGTGAAGTGTAGACTCCTTCTGGATATTGTAATCAGCAAGGGTACGACCA 917230 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || || || || || |||| | || ||||| || | || | | ||||||| Sbjct 917229 TCCTCCAGTTGTTTCCCCGCAGATATCAATCTTTGCTGATCTGGAGGAATCCCCTCCTTG 917170 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| ||| |||||| ||||| | | | || || ||| ||| || || | || Sbjct 917169 TCC-TGAATTTTTGCTTTGACATTGTCAATTGTATCTGAGCT---TTCAACTTCAAGAGT 917114 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||||| ||||| || || ||||| || |||| ||||||| Sbjct 917113 GATGGTCTTGCCTGTAAGGGTCTTAACGAAGACTTGCATT 917074 >seq964 Length=1826015 Score = 116 bits (128), Expect = 4e-21 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||||||||| | || |||||| |||| ||| ||||||||| |||||||| ||||| Sbjct 764045 TCCTCCTCTTAACCTCAGCACCAAGTGCAGTGTAGACTCCTTTTGGATATTGTAGTCAGC 764104 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || | || || |||||||| |||||||| || | | |||||| || | || Sbjct 764105 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCCGGTGG 764164 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATT 43131 | | |||||||||| ||| |||||| || | | | | || || |||| | Sbjct 764165 GATTCCCTCCTTGTCC-TGAATTTTTGCCTTCACATTATCAATAGTATCAGAGCTC---T 764220 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| || | || ||||| || || || | ||||| || ||||| |||||| Sbjct 764221 CCACCTCAAGAGTAATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCATT 764273 Score = 100 bits (110), Expect = 3e-16 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | ||| |||||| || || ||||||||||| ||||| || | || || Sbjct 764747 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGAGTACGACCATCTTC 764806 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| |||||||| || | | ||||||||| | || | || ||||| ||| | Sbjct 764807 CAGCTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCC-T 764865 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 || | || | |||| | | | ||||| |||| || || || | ||||||| Sbjct 764866 GAATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTC---TCAACCTCCAGGGTGATGG 764922 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || ||||| |||||||||||||| Sbjct 764923 TCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 764956 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | ||| |||||| || || |||||||| |||| ||| || | Sbjct 764513 ACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTGCGACC 764572 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || || | | ||||||||| | || | || |||||| Sbjct 764573 YTCCTCCAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGAGGAATGCCCTCCTT 764632 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTC---GCTCGATTCCACATCGACCG 43143 ||| ||| || || | ||| | | | ||||| |||| ||||| || | | Sbjct 764633 ATCCTGGATCTTGGCCTTAA-CGTTGTCGATTGTGTCAGAGCTC---TCCACCTCCAAGG 764688 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || ||||| || || ||||| || ||||||||||| Sbjct 764689 TGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 764728 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||||||||| || | || || | ||||||||||| || Sbjct 763853 CTCCTTCTGGATGTTGTAGTCAGCCAGAGTACGTCCATCTTCCAATTGCTTACCAGCAAA 763912 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | || |||||||||| || | | |||||||||| |||||| || | | Sbjct 763913 GATCAATCTTTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATTTTAGCCTTCACATT 763972 Query 43112 CGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | |||||| ||| ||||| || | |||||||| || || || || ||||| Sbjct 763973 ATCAATTGTGTCGGAACTC---TCCACCTCCAAAGTGATGGTCTTTCCTGTCAGGGTCTT 764029 Query 43169 TACAAAGATTTGCATT 43184 ||||| || |||||| Sbjct 764030 CACAAAAATCTGCATT 764045 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || ||||| | ||||| || | || ||||||||||| ||||||||||| Sbjct 764958 CCTCCCCTCAAACGAAGAACCAAGTGGAGGGTCGATTCCTTTTGAATGTTGTAATCAGCA 765017 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | |||| || |||||||| || || || || || | |||||||| | || Sbjct 765018 AGAGTTCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGA 765077 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||||| || ||| ||| || | | | | ||||| |||| || Sbjct 765078 ATCCCTTCCTTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCGGAGCTC---TCG 765134 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| || || || || || || || ||||| |||||||| ||||| Sbjct 765135 ACCTCGAGAGTAATTGTCTTTCCAGTAAGGGTCTTAACAAAGATCTGCAT 765184 >seq978 Length=8767375 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||||||||| ||||| ||| |||| || |||||||| || || || Sbjct 3246111 CTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGCCCGTCTTCAAGCTGCTTGCCGGCAAA 3246170 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||| | | ||||||||| | || | | |||||| | | ||| |||| | || ||| Sbjct 3246171 TATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTAT-CTTGAATTTTGGCTTTCACGT 3246229 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || ||| || || || | || ||||| || || || || |||| Sbjct 3246230 TGTCAATGGTATCAGAACTC---TCGACTTCCAGAGTAATGGTCTTTCCAGTGAGAGTCT 3246286 Query 43168 TTACAAAGATTTGCAT 43183 | || || || ||||| Sbjct 3246287 TCACGAAAATCTGCAT 3246302 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | ||| | ||||| || | || |||||||||||| |||||||| || Sbjct 3246532 CCTCCTCTCAGACGGAGGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCGGCA 3246591 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| |||| || || ||||| || ||||| || || | ||||| || | || Sbjct 3246592 AGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCTGGAGGG 3246651 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||||| || ||| ||| ||||| | | | ||||| |||| || Sbjct 3246652 ATTCCTTCCTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCGGAGCTC---TCG 3246708 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| || || || || || || || ||||| || ||||| ||||| Sbjct 3246709 ACCTCGAGAGTAATTGTCTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 3246758 >seq937 Length=9237706 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || || ||||| || || || | | || || ||||||||||| ||||| Sbjct 196062 CTCCTTCTGGATGTTATAATCCGCTAGGGTTCTGCCATCCTCGAGCTGCTTACCGGCGAA 196003 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || |||||||| || | || | || ||||| || ||| || |||| | Sbjct 196002 GATAAGCCGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGATCTTAGCCTTGACATT 195943 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||||| || || | || ||||| || |||||||| || || || Sbjct 195942 GTCAATGGTGTCGGAGGATTCGACCTCCAGGGTTATGGTCTTACCCGTTAGGGTTTTCAC 195883 Query 43172 AAAGATTTGCATTTT 43186 ||||| ||||| || Sbjct 195882 GAAGATCTGCATCTT 195868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571810602382120