Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq946 111 2e-19 seq977 98.7 1e-15 seq948 87.8 3e-12 seq964 84.2 3e-11 >seq946 Length=5553863 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146047 CGTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATC 146106 |||||| ||||| || || || ||||| || | || |||||||| |||||||| || Sbjct 333423 CGTTCCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATATTATAGTC 333482 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 | | ||| | || ||| || ||||| || ||||||||||||| ||| |||||||| || Sbjct 333483 GGCCAAAGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAGG 333542 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||||| |||||||| || || Sbjct 333543 AGGAATACCTTCTTTKTCCTG 333563 >seq977 Length=5547227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||||| || || | |||||| || || ||||| || || || || | Sbjct 917075 TTCCACCACGAAGTCGCAAGACAAGATGTAAGGTGGACTCTTTTTGAATGTTGTAGTCAG 917016 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| |||| | ||| || | |||||| |||||||| ||||||||||||||||| || | Sbjct 917015 CAAGGGTTCGACCATCCTCCAGTTGTTTCCCAGCAAAGATCAATCTTTGCTGATCAGGTG 916956 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || ||||| || ||||| Sbjct 916955 GGATACCTTCCTTGTCTTG 916937 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || ||| ||||| ||| ||||| || || |||||||||| ||| || |||| ||| Sbjct 917742 AACACCTGATGTAGAGTTGATTCCTTGTGGATGTTATAATCTGCAAGTGTCCTGCCATCT 917683 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || || ||||| ||||||||||||| | |||||||| |||||||| |||||||| || Sbjct 917682 TCAAACTGTTTGCCAGCAAAAATCAGACGCTGCTGATCAGGAGGAATGCCTTCTTTGTCC 917623 Query 146186 TG 146187 || Sbjct 917622 TG 917621 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | || || || |||| ||| | ||| || || ||| || ||||||||||| | Sbjct 1049534 CCACCACGGAGCCTCAAGACCAGATGAAGAGTCGACTCCTTTTGA-ATATTATAATCGGC 1049476 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||||| || || || || || || |||||||| || | ||| ||||| |||||||| Sbjct 1049475 AAGAGTTCGGCCGTCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAGG 1049416 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| || || ||||| || Sbjct 1049415 AATCCCCTCCTTATCCTG 1049398 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| | ||||| || || | ||| | ||| || || ||| || || || || || Sbjct 916847 TTCCACCCCGAAGTCGCAAGACGAGATGGAGAGTGGACTCCTTTTGA-ATGTTGTAGTCA 916789 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| ||| || | |||||| || ||||| ||||||||||||||||| || Sbjct 916788 GCAAGAGTTCGAGCATCCTCCAGTTGTTTCCCGGCAAAGATCAATCTTTGCTGATCAGGT 916729 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || | ||||| || ||||| Sbjct 916728 GGGAYACCTTCCTTGTCTTG 916709 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || || || | ||||| ||||| || || ||||| ||||| | Sbjct 1049762 CCACCACGAAGCCTCAAAACGAGATGTAGGGTAGACTCCTTCTGAATATTGTAATCCGCC 1049703 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||||| || || || || || |||||||| |||| | ||||||||||||||| Sbjct 1049702 AAGGTTCTGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGA 1049643 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 1049642 ATGCCTTCCTTATCCTG 1049626 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | || || || || | ||| | ||| || || ||| || ||||||||||| | Sbjct 1026303 CCACCGCGGAGCCTCAAGACAAGATGAAGAGTCGACTCCTTTTGA-ATATTATAATCGGC 1026361 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||| | || || || || || || ||||| || || | ||| ||||| |||||||| Sbjct 1026362 AAGAGTACGGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGG 1026421 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| || || |||||||| Sbjct 1026422 AATGCCCTCCTTATCTTG 1026439 >seq948 Length=7662486 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 |||||||| || | ||| |||| || ||| || || || ||||| ||||||||||||||| Sbjct 7046344 ATATTATAGTCAGCAAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAAATCAATCTT 7046403 Query 146156 TGCTGATCCGGAGGAATTCCT 146176 ||||| ||||| ||||||||| Sbjct 7046404 TGCTGGTCCGGTGGAATTCCT 7046424 >seq964 Length=1826015 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || | || ||||| ||| || || || ||||| | ||||||||||| || || Sbjct 764976 ACCAAGTGGAGGGTCGATTCCTTTTGA-ATGTTGTAATCAGCAAGAGTTCTGCCGTCCTC 765034 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || ||||| ||||| |||| |||||||| || || ||||| ||||| |||||||| Sbjct 765035 GAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTATCTTG 765094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743517301095680