Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq977 98.7 6e-16 seq959 93.3 3e-14 seq937 91.5 1e-13 seq964 84.2 1e-11 seq978 82.4 5e-11 >seq977 Length=5547227 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| ||||||| || || || | ||| || || || || || || |||| Sbjct 1026303 CCACCGCGGAGCCTCAAGACAAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCA 1026362 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| ||||||||||| || ||||| ||||| | ||||||||| || Sbjct 1026363 AGAGTACGGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGA 1026422 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || || || ||| | | | | |||| |||| || || Sbjct 1026423 ATGCCCTCCTTATCTTGAATTTTAGCCTTGACGTTGTCAATCGTGTCGGAACTCTCAACC 1026482 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || |||||||| |||||||| |||||||||||||| Sbjct 1026483 TCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 1026529 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||| || |||| || || |||| || | || ||||| ||||| Sbjct 1026567 TCCTTCTGAATGTTATAATCGGCTAGGGTCCGACCGTCCTCGAGTTGTTTGCCGGCGAAG 1026626 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || |||||||| ||| || | || ||||||||| ||||| ||| | || Sbjct 1026627 ATTAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTA 1026686 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||||| ||||| || | ||||||||||| ||||| || ||||||||| Sbjct 1026687 TCGATGGTATCGGAACTCTCGACCTCGAGAGTGATGGTTTTACCGGTTAGGGTTTTCACA 1026746 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 1026747 AAGATCTGCATC 1026758 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||| || |||| ||| ||| |||| || | |||||||| |||||| Sbjct 1049270 TCCTTCTGAATGTTATAATCGGCGAGCGTCCGGCCGTCCTCGAGTTGCTTGCCGGCGAAA 1049211 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||| || || | | |||||| || ||||| ||| | || Sbjct 1049210 ATGAGGCGCTGCTGATCTGGAGGAATACCCTCCTTATCTTGGATCTTAGCCTTGACATTA 1049151 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | ||||| || | |||||||| |||||||| || ||||||||| Sbjct 1049150 TCAATGGTATCAGAACTCTCGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCACA 1049091 Query 34379 AAGATCTGCATC 34390 || || |||||| Sbjct 1049090 AAAATTTGCATC 1049079 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||||||||| || | || ||||| || ||||| || || | ||| ||| |||| Sbjct 1025861 CAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCCAGGGTTCGGCCGTC 1025920 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGT 34295 ||||||||||| || || || || | | || ||||| | ||| | || ||||| | Sbjct 1025921 TTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGGATCCCT-TCCTTAT 1025979 Query 34296 CGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 | |||||| ||| | || | || | ||| | ||| || || | ||||||| Sbjct 1025980 CCTGAATCTTTGTCTTGACATTATCAATAGTATCAGAACTTTCAACCTCAAGTGTGATGG 1026039 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| |||||||||||||| Sbjct 1026040 TTTTACCGGTGAGGGTTTTGACAAAGATCTGCAT 1026073 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| ||||||| || || || | || || ||||| |||||||| || | | Sbjct 1026075 CCACCGCGGAGCCTCAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 1026134 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | | |||| ||||||||||| || || || || || |||||||| || || Sbjct 1026135 AAGGTTCTGCCGTCCTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGA 1026194 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || |||||| ||| | | | |||||| ||| | ||||| Sbjct 1026195 ATCCCTTCCTTATCTTGAATCTTTGCCTTCACGTTGTCTATCGTATCAGAGCTCTCGACC 1026254 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||| || || || || || || ||||| ||||| || |||||| Sbjct 1026255 TCCAACGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCATC 1026302 >seq959 Length=5381930 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||||||||||||||| | || | | |||| || | |||||| || ||||| Sbjct 731799 TTCCTTCTGTATGTTGTAGTCTGCTAGGGTTCTGCCGTCTTCGAGCTGCTTCCCGGCGAA 731740 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGA 34315 ||||| || |||||||| || | || ||||||||| || ||||| ||| | | Sbjct 731739 GATGAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTC--CTGGATTTTGGCCTTGACA 731682 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | | || | || | || ||||| || | ||||| || || || ||||| ||||| Sbjct 731681 TTGTCGATGGTGTCAGAAGACTCGACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTG 731622 Query 34376 ACAAAGATCTGCAT 34389 || || |||||||| Sbjct 731621 ACGAAAATCTGCAT 731608 >seq937 Length=9237706 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| ||||| || || | || | | | || Sbjct 196082 AGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTATAATCCGCTAGGGTTCTGCCATCC 196023 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| || ||||||||||| || || | || ||||| || Sbjct 196022 TCGAGCTGCTTACCGGCGAAGATAAGCCGCTGCTGATCAGGTGGGATGCCTTCCTTATCT 195963 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | |||| |||||||| |||| || ||||| Sbjct 195962 TGGATCTTAGCCTTGACATTGTCAATGGTGTCGGAGGATTCGACCTCCAGGGTTATGGTC 195903 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 195902 TTACCCGTTAGGGTTTTCACGAAGATCTGCATC 195870 >seq964 Length=1826015 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | || || || |||| ||| | || ||| ||||| ||||| ||||| | Sbjct 764273 TCCTCCCCTCAATCTGAGGACCAAGTGAAGGGTGGATTCCTTCTGAATGTTATAGTCAGC 764332 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| || | ||||||||| || || || | || ||||||||| || Sbjct 764333 AAGGGTGCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGG 764392 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| || ||| ||||| | || | | || | ||| | |||| Sbjct 764393 GATACCTTCCTTGTCTTGAAT-TTTAGCTTTCACATTGTCAATGGTATCAGAACTCTCGA 764451 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | |||| |||||||| || || ||||| || ||||| |||||||||||| Sbjct 764452 CCTCCAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCATC 764501 >seq978 Length=8767375 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || ||||| || | || || ||||| | ||| || ||||| ||||||||||| Sbjct 3245617 AAGCCACCGCGGAGACGGAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCA 3245676 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | ||| | | | || ||||| ||||| || ||||| || | || ||||||||| Sbjct 3245677 GCCAGGGTCCTGCCATCTTCCAATTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGT 3245736 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | ||||||||| || ||| ||| | || | || | ||| | || Sbjct 3245737 GGGATTCCCTCCTTGTCCTGAATTTTTGCCTTCACATTATCAATGGTATCAGAGCTCTCA 3245796 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | || ||||| || ||||| | || ||||||||||||||||| Sbjct 3245797 ACCTCAAGAGTAATGGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 3245846 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | |||||| || |||| ||| | || ||| ||||| ||||| ||||| | Sbjct 3245847 TCCTCCCCTCAGCCTGAGGACCAAGTGAAGGGTCGATTCCTTCTGAATGTTATAGTCAGC 3245906 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| |||| || | ||||||||| || || || | | ||||||||| || Sbjct 3245907 AAGAGTACGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGG 3245966 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| || ||| ||| | || | | || | ||| | || || Sbjct 3245967 GATCCCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCGATGGTATCAGAGCTCTCAAC 3246026 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||| || ||||| || || || | || ||||| |||||||||||| ||| Sbjct 3246027 CTCCAGAGTAATGGTCTTCCCTGTCAAGGTCTTCACGAAGATCTGCATCCCTC 3246079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323068145246240