Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq977 104 2e-17 seq946 89.7 4e-13 >seq977 Length=5547227 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| ||| | || |||| ||||| || || |||||||||||||| || || ||| Sbjct 1025847 CCACCCCTTAGACGCAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCC 1025906 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||| || || || ||| |||| | ||||||||| ||| || Sbjct 1025907 AGGGTTCGGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGG 1025966 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||| | | |||||| | ||| ||| ||| || Sbjct 1025967 ATCCCTTCCTTATCCTGAATCTTTGTCTTGACATTATCAATAGTATCAGAACTTTCAACC 1026026 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| |||| ||||| | ||||| ||||| || ||||| Sbjct 1026027 TCAAGTGTGATGGTTTTACCGGTGAGGGTTTTGACAAAGATCTGCAT 1026073 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || || |||||||||||||||||||| || | ||| || ||| |||| |||||| || Sbjct 917043 GTGGACTCTTTTTGAATGTTGTAGTCAGCAAGGGTTCGACCATCCTCCAGTTGTTTCCCA 916984 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | |||||| ||||| || | |||||||| || ||| | | |||| Sbjct 916983 GCAAAGATCAATCTTTGCTGATCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGCCTTG 916924 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 | | | | |||||| ||| |||| |||||| | ||||| || | || Sbjct 916923 GCATTATCGATGGTGTCAGAACTCTCAACCTCAAGCGTGATGGTCTTGCCTGTGATGGTC 916864 Query 18309 TTTACAAAAATTTGCATT 18326 || ||||||||| ||||| Sbjct 916863 TTAACAAAAATTYGCATT 916846 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/229 (68%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| ||||| |||| | || | || || || || || ||||||||||||||||| || Sbjct 916846 TCCACCCCGAAGTCGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGC 916787 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | ||| |||| |||||| || ||| |||| | |||||| ||||| || Sbjct 916786 AAGAGTTCGAGCATCCTCCAGTTGTTTCCCGGCAAAGATCAATCTTTGCTGATCAGGTGG 916727 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| | | |||||| | ||| |||||| || Sbjct 916726 GAYACCTTCCTTGTCTTGAATCTTTGCCTTGACGTTATCAATGGTGTCAGAACTCTYAAC 916667 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| |||||| | ||||| | | || | ||||| ||||||||| Sbjct 916666 CTCAAGCGTGATGGTCTTGCC--TGAGGGTCTWAACAAATATTTGCATT 916620 >seq946 Length=5553863 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || || | |||| ||||||||||||||||||||| || || |||||||| Sbjct 333426 TCCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATATTATAGTCGGC 333485 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 || || | |||||||||||| || || ||| | || ||||| || ||||| Sbjct 333486 CAAAGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATC 333539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379339473833355