Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq940 233 2e-56 seq977 111 1e-19 seq978 89.7 5e-13 >seq940 Length=8971605 Score = 233 bits (258), Expect = 2e-56 Identities = 583/877 (66%), Gaps = 15/877 (2%) Strand=Plus/Plus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 ||||||||| ||| |||| || | |||||| | |||||||| || ||||| || || || Sbjct 8502096 CATGTTTCCAATTCAATACCCTCAGATTTGGGAGATGTACAAGAAAGCAGAGGCCTCCTT 8502155 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGA 57664 ||||| | ||| || || ||||| || |||| || | | ||||| ||||| Sbjct 8502156 CTGGACTGCCGAGGAGGTCGACCTCTCCCAGGACATGCGTCAATGGGAAAACCTCACCCC 8502215 Query 57665 ATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGT 57724 ||| | | ||||||| | ||| |||| ||||||||| | || ||||| || || Sbjct 8502216 TGACGAGCGTCACTTTATTAGTCGCGTTCTGGCATTTTTCGCCMCCTCAGATGGCATCGT 8502275 Query 57725 TAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTT 57784 | |||||| | | || | |||| ||||||| || || | ||||| | ||| Sbjct 8502276 TTTGGAGAATCTCGCCGGACGATTCATGAAAGAAGTTCAGGTCTCCGAGGCRCGTGCCTT 8502335 Query 57785 TTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGA 57844 ||||| || ||| | ||||| |||||| | ||||| || |||||| || | |||| Sbjct 8502336 CTACGGCTTCCAAATTGCCATCGAAAACATTCATTCCGAGATGTATAGRCTCTTGCTCGA 8502395 Query 57845 TACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCC 57904 | || | |||||| |||||||| | || || || |||| || || || || || Sbjct 8502396 GTCCTARATTAAGGACCCAGACGAGAAGCACAGGCTCTTTCACGCAATGGAGACCATACC 8502455 Query 57905 C-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGT 57963 ||| | | |||||||| ||||| | || |||||| | ||| | | | Sbjct 8502456 TTGCGTT-GAAAAGAAGGCCAAGTGGGCCCTCCGATGGATCGACGGCGGA---GAATCAT 8502511 Query 57964 TCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTG 58023 | || ||| | | |||| || || |||||| || |||||||| ||||| || ||| Sbjct 8502512 TTGCGGAGCGTTTGGTCGCCTTTGCTTGCGTCGAGGGGATATTCTTCTCGGGGAGTTTTT 8502571 Query 58024 CGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGT 58083 || ||||||||| | ||||||||||| || |||||||| |||| || ||||||| Sbjct 8502572 GCGCGATATTTTGGTTAAAGAAACGCGGGCTAATGCCCGGTTTGACCTTCTCGAACGAGT 8502631 Query 58084 TGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTG 58143 | || ||||| || |||||||||||| ||| || |||||| || | ||| || | || Sbjct 8502632 TAATCTCGCGAGATGAGGGTCTCCATTGTGACTTCGCGTGCTTACTCTACAGTCTC-CTG 8502690 Query 58144 TCAATAAACCGACGCG-GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAA 58202 || || ||| ||| || ||| | || | | || || || | || || Sbjct 8502691 AGGATGAAGTTGAGCGAGGACCGAATCAGAGGAATCGTTGCGGATGCAGTGGATATAGAG 8502750 Query 58203 AATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATG 58262 | || || || ||| || || ||| || || | || |||||| ||| | ||| Sbjct 8502751 AGGGAATTCGTATGCGACGCGCTGCCGTGCGCGCTGGTGGGCATGAACGGTGACCTAATG 8502810 Query 58263 TCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA- 58321 ||||||||||| ||||| || |||||| || |||| | || | || | Sbjct 8502811 AGTAAGTACATTGAATTTGTAGCAGACAGA---TTACTCGGCGCTTTAGGCTACGGTAAA 8502867 Query 58322 --TTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCG-AGGGCAAGAC 58378 || || | || ||||| |||| ||| | ||||| | ||| | |||| ||||| Sbjct 8502868 ATGTATAATGTTCAGAACCCGTTCGATTGGATGGAGCTGAT-TAGCTTGCAGGGGAAGAC 8502926 Query 58379 AAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAA 58415 ||||| ||||| || | || | |||||||||||| Sbjct 8502927 GAACTTCTTCGAGAAGAGGGTCGGAGAATATCAAAAA 8502963 >seq977 Length=5547227 Score = 111 bits (122), Expect = 1e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || |||||| |||| || || || || || | || ||||| || Sbjct 917530 CATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACCATTACTTTGGAGGTTGAGAGCTC 917589 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | | || | ||||| | || |||||| |||||| | || || || || Sbjct 917590 CGACACTATTGACAATGTCAAGGCCAAGATTCAGGACAAAGAAGGCATTCCTCCTGATCA 917649 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||||||||| ||||| | ||| | |||||||| Sbjct 917650 GCAGCGTCTGATTTTTGCTGGCAAACAGTTTGAAGATGGCAGGACACTTGCAGATTATAA 917709 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGG 31415 ||| || || ||||| ||||| |||| ||| | || |||||| Sbjct 917710 CATCCACAAGGAATCAACTCTACATCAGGTGTTGTGATTGAGGG 917753 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || || ||||| || ||||| ||||| || | || ||||| || Sbjct 1049307 CATGCAAATATTTGTTAAAACTCTAACCGGCAAGACGATTACTCTTGAGGTTGAGGGTTC 1049366 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | ||| ||| ||||| || | || || ||||| Sbjct 1049367 TGACACGATTGACAATGTCAAGGCCAAAATTCAGGATAAGGAGGGGATTCCTCCGGACCA 1049426 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || ||||| || |||||||| ||| ||| | ||||||||| Sbjct 1049427 GCAGAGACTCATCTTTGCTGGGAAGCAGTTGGAGGACGGCCGAACTCTTGCCGATTATAA 1049486 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||| || ||||||||||||||||| Sbjct 1049487 TATTCAAAAGGAGTCGACTCTTCATCTGGT 1049516 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || ||||| || ||||| ||||| || | || ||||| ||| Sbjct 1026529 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAGACGATTACTCTTGAGGTTGAGAGTTCC 1026470 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | ||| || ||||| ||| | || || |||||| Sbjct 1026469 GACACGATTGACAACGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCTCCGGACCAG 1026410 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || |||||||| || |||||||| ||| ||| | ||||||||| Sbjct 1026409 CAGAGACTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCCGTACTCTTGCCGATTATAAT 1026350 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||| || |||||||||||||| || Sbjct 1026349 ATTCAAAAGGAGTCGACTCTTCATCTTGT 1026321 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || || ||||| ||||| | || |||||| || Sbjct 1026073 ATGCAGATCTTTGTCAAAACCCTCACCGGTAAAACCATCACACTTGAGGTTGAAAGTTCT 1026014 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | ||||| ||| ||| | ||| |||||||| | || || ||||| Sbjct 1026013 GATACTATTGATAATGTCAAGACAAAGATTCA-GGATAAGGAAGGGATCCCTCCGGACCA 1025955 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | | || || ||||| || |||||||||||| || || |||||||| Sbjct 1025954 ACAAAGATTGATCTTTGCTGGGAAGCAGTTGGAAGACGGCCGAACCCTGGCGGATTATAA 1025895 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||||||| || || ||||||||||| || | || ||||| || Sbjct 1025894 CATTCAAAAAGAGTCCACGCTTCATCTGGTGCTGCGTCTAAGGGGTGG 1025847 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || || ||||| ||||| |||| || || ||| Sbjct 1026757 ATGCAGATCTTTGTGAAAACCCTAACCGGTAAAACCATCACTCTCGAGGTCGAGAGTTCC 1026698 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || |||||||| ||| | || ||||| ||| Sbjct 1026697 GATACCATCGATAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAG 1026638 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| ||||| ||||| |||||||| | || ||| | ||| | |||||||||| Sbjct 1026637 CAGCGCCTAATCTTCGCCGGCAAACAACTCGAGGACGGTCGGACCCTAGCCGATTATAAC 1026578 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || ||||| || || Sbjct 1026577 ATTCAGAAGGAGTCCACCCTCCATCTCGTTCT 1026546 >seq978 Length=8767375 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||||| || || || || | || ||||| || Sbjct 3246074 ATGCAGATCTTCGTGAAGACCTTGACAGGGAAGACCATTACTCTGGAGGTTGAGAGCTCT 3246015 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | ||| ||||||||| || | || || |||||| Sbjct 3246014 GATACCATCGACAATGTCAAGGCAAAAATTCAGGACAAGGAGGGGATCCCACCAGACCAG 3245955 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || ||||| ||| | || ||| ||| | || |||||| Sbjct 3245954 CAGAGATTGATCTTTGCCGGCAAGCAGCTCGAGGACGGGCGTACTCTTGCTGACTATAAC 3245895 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || |||||||| ||||| |||| || || |||||||| || Sbjct 3245894 ATTCAGAAGGAATCGACCCTTCACTTGGTCCTCAGGCTGAGGGGAGG 3245848 Score = 82.4 bits (90), Expect = 7e-11 Identities = 166/243 (68%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 31182 TTGAATCAAACA--TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGA 31239 |||| | ||||| |||| || ||||| ||||| || || || || || || || |||| Sbjct 3246771 TTGATTTAAACAGATGCAGATCTTCGTGAAGACCCTTACCGGAAAGACAATTACTCTCGA 3246712 Query 31240 CGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCG 31298 || || ||||||| |||| | |||||| || ||| | || |||||||| Sbjct 3246711 GGTCGAGAGCTCCGACACCATCGACAATGTCAAAGCAAAGA-TCCAAGATAAGGAAGGAA 3246653 Query 31299 TGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTA 31358 | || || || ||||| | || || ||||| || || || | || ||| | ||| Sbjct 3246652 TCCCTCCAGATCAGCAAAGGCTGATCTTCGCCGGAAAGCAACTCGAGGACGGCAGGACCC 3246593 Query 31359 TGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCG 31418 | |||||| ||||||||||| || || || || || |||| || | ||||| || | Sbjct 3246592 TTGCCGATTACAACATTCAAAAGGAGTCAACCCTCCACTTGGTCCTCCGTCTGAGAGGAG 3246533 Query 31419 GTA 31421 ||| Sbjct 3246532 GTA 3246530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760944933680