Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq940 167 3e-36 seq558 82.4 1e-10 >seq940 Length=8971605 Score = 167 bits (184), Expect = 3e-36 Identities = 402/606 (66%), Gaps = 2/606 (0%) Strand=Plus/Minus Query 33579 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638 || || ||||| || || || |||||||| |||| ||||| ||||| || || || Sbjct 8502674 AAGCACGCGAAGTCACAATGGAGACCCTCATCTCGCGAGATTAACTCGTTCGAGAAGGTC 8502615 Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG-GAAAA 33697 | ||||||||||| || || || || | ||||||||| | || || ||| || || Sbjct 8502614 AAACCGGGCATTAGCCCGCGTTTCTTTAACCAAAATATCGC-GCAAAAACTCCCCGAGAA 8502556 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG 33757 ||| || || || || ||||||||| | | | ||| || | | | | | | Sbjct 8502555 GAATATCCCCTCGACGCAAGCAAAGGCGACCAAACGCTCCGCAAATGATTCTCCGCCGTC 8502496 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | ||||| | ||||||||||| || ||||| || || || || || | Sbjct 8502495 GATCCATCGGAGGGCCCACTTGGCCTTCTTTTCAACGCAAGGTATGGTCTCCATTGCGTG 8502436 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 |||||| || || || | || |||| || | |||| ||| || |||||||| Sbjct 8502435 AAAGAGCCTGTGCTTCTCGTCTGGGTCCTTAATYTAGGACTCGAGCAAGAGYCTATACAT 8502376 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || |||||||||||||| ||||| || || || |||||||| | ||||||| | Sbjct 8502375 CTCGGAATGAATGTTTTCGATGGCAATTTGGAAGCCGTAGAAGGCACGYGCCTCGGAGAC 8502316 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| |||||| | |||||| | || | ||| || || || ||||| || || Sbjct 8502315 CTGAACTTCTTTCATGAATCGTCCGGCGAGATTCTCCAAAACGATGCCATCTGAGGKGGC 8502256 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 34057 ||||| |||| || | | ||||| | ||||| || || || || | ||| | Sbjct 8502255 GAAAAATGCCAGAACGCGACTAATAAAGTGACGCTCGTCAGGGGTGAGGTTTTCCCATTG 8502196 Query 34058 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 34117 | || || | || | || || || || | ||||| || || |||||||| || || Sbjct 8502195 ACGCATGTCCTGGGAGAGGTCGACCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCTTTCTT 8502136 Query 34118 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 34177 ||||| | ||| || | | | ||||| ||||| || || || | | ||| ||||| Sbjct 8502135 GTACATCTCCCAAATCTGAGGGTATTGAATTGGAAACATGCAGAAGCGGTCTGGGTTTGG 8502076 Query 34178 TGCAAG 34183 ||| || Sbjct 8502075 TGCCAG 8502070 >seq558 Length=4929555 Score = 82.4 bits (90), Expect = 1e-10 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| ||||| || | |||||| || || || ||||||||| || ||| | | || Sbjct 349508 AGTTCCAGCATTGAAAAGGGTAGGGGATGCATGGGTAAACCATCGTTGAGACATCAAATG 349449 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 || || ||||| || || ||||| | ||| || ||||| || | || | ||| | Sbjct 349448 ATATGTTCTGATAGCAGATTCAATATCATCCTTG-TGGATTCCAACAGATACCCTCATCA 349390 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 |||||||||| || ||||| |||| ||| | | || || | ||| || | || | Sbjct 349389 ACATGTGCTGTGGCCTTTCTACAACTTTTCCTTGGACCTTTAAGAGGTAAGACCTCTCAA 349330 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| || ||||| || | || ||||||||| || || || || Sbjct 349329 GTGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGAT 349281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629809892607120