Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq940 172 7e-38 seq558 114 2e-20 >seq940 Length=8971605 Score = 172 bits (190), Expect = 7e-38 Identities = 387/579 (67%), Gaps = 2/579 (0%) Strand=Plus/Minus Query 36155 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 36214 || || ||||| || || || |||||||| |||| ||||| ||||| || || || Sbjct 8502674 AAGCACGCGAAGTCACAATGGAGACCCTCATCTCGCGAGATTAACTCGTTCGAGAAGGTC 8502615 Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAA 36273 | ||||||||||| || || || || | ||||||||| | |||||| ||| || || Sbjct 8502614 AAACCGGGCATTAGCCCGCGTTTCTTTAACCAAAATATCG-CGCAAAAACTCCCCGAGAA 8502556 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG 36333 ||| || || || || |||||||| | | | ||| || | | | | | | Sbjct 8502555 GAATATCCCCTCGACGCAAGCAAAGGCGACCAAACGCTCCGCAAATGATTCTCCGCCGTC 8502496 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| | ||||| | ||||||||||| || ||||| || ||||| || || | Sbjct 8502495 GATCCATCGGAGGGCCCACTTGGCCTTCTTTTCAACGCAAGGTATGGTCTCCATTGCGTG 8502436 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 |||||| || || || | || |||| || | || | ||| || |||||||| Sbjct 8502435 AAAGAGCCTGTGCTTCTCGTCTGGGTCCTTAATYTAGGACTCGAGCAAGAGYCTATACAT 8502376 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 || |||||||||||||| ||||| ||||| || |||||||| | ||||||| | Sbjct 8502375 CTCGGAATGAATGTTTTCGATGGCAATTTGGAAGCCGTAGAAGGCACGYGCCTCGGAGAC 8502316 Query 36514 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 36573 ||| |||||| | |||||| | || | ||| || || || || || || || Sbjct 8502315 CTGAACTTCTTTCATGAATCGTCCGGCGAGATTCTCCAAAACGATGCCATCTGAGGKGGC 8502256 Query 36574 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATC 36633 ||||| |||| || | | ||||| | |||| || || || || | ||| | Sbjct 8502255 GAAAAATGCCAGAACGCGACTAATAAAGTGACGCTCGTCAGGGGTGAGGTTTTCCCATTG 8502196 Query 36634 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 36693 | || || | || | || || || || | ||||| || || |||||||| || || Sbjct 8502195 ACGCATGTCCTGGGAGAGGTCGACCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCTTTCTT 8502136 Query 36694 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 ||||| | ||| || | | | |||||||||||||| || Sbjct 8502135 GTACATCTCCCAAATCTGAGGGTATTGAATTGGAAACAT 8502097 >seq558 Length=4929555 Score = 114 bits (126), Expect = 2e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 ||||| || || | || | ||| |||| ||| | || |||| |||||||| ||||||| Sbjct 349844 CCTCCTTGGTCCACATAACGAGCAGTGTCATTGAATACCCTCAGCATTGGAACAATACCA 349785 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 |||||||| ||||| || || ||||| |||||| | |||||||| ||| || ||| Sbjct 349784 TTGGATGTCCCATTTGTTCCTCTAATATAACTTCCAGTGGCACGAATGTTATGAACAGAT 349725 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| || || || || ||| ||| | || ||| || | |||||||| ||| Sbjct 349724 ACACCAATCCCTCCAGCTGATTTGCTGATAACAGCRCATTCCTTGAGGGTATCATATATG 349665 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 ||||| || || || || ||||| | || ||||||||| Sbjct 349664 CCCTCAATGCTGTCTTCTTTCATGCACACCAGGAAACAGCTA 349623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658164745610360