Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq978 98.7 1e-15 seq977 98.7 1e-15 seq959 96.9 3e-15 seq937 91.5 1e-13 seq964 89.7 5e-13 >seq978 Length=8767375 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || ||||| | || ||||| ||||||||||| |||||| Sbjct 3246532 CCTCCTCTCAGACGGAGGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCGGCA 3246591 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| ||||| || || || || ||||||| | ||||||||| ||||| Sbjct 3246592 AGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCTGGAGGG 3246651 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || ||| ||| ||| | | || | ||||||| | ||| ||| Sbjct 3246652 ATTCCTTCCTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCGGAGCTCTCGACC 3246711 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| ||||| | || || ||||| || ||||| Sbjct 3246712 TCGAGAGTAATTGTCTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 3246758 >seq977 Length=5547227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || ||||||||||| | ||| || ||||| | |||||| ||| Sbjct 917727 GTTGATTCCTTGTGGATGTTATAATCTGCAAGTGTCCTGCCATCTTCAAACTGTTTGCCA 917668 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| | |||||||| |||||||| ||||| |||||||||||||| ||| | || | || Sbjct 917667 GCAAAAATCAGACGCTGCTGATCAGGAGGAATGCCTTCTTTGTC-CTGAATCTTGGCCTT 917609 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | ||| ||||| | || | ||||| || ||||| || Sbjct 917608 GACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTAATGGTCTTCCCAGTCAAAGT 917549 Query 139747 TTTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 917548 CTTCACAAAGATCTGCAT 917531 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||||| | ||| | ||| | ||||| || || || || || ||||||||||| | Sbjct 1025619 CCGCCTCTAAGACGGAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTATAATCAGCC 1025678 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| || || || ||||| |||| || | |||||||| ||||| Sbjct 1025679 AGAGTACGGCCATCTTCAAGTTGCTTCCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGA 1025738 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| | |||| || | | || | || || | | ||| || Sbjct 1025739 ATTCCCTCCTTGTC-CTGAATCTTTGCCTTCACGTTGTCTATGGTATCTGAGCTCTCAAC 1025797 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||| |||||||| ||||| |||||||| ||||| Sbjct 1025798 CTCCAGCGTAATCGTCTTCCCGGTCAATGTTTTAACGAATATCTGCAT 1025845 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || | || ||||| || | |||| ||| ||||||||||||||||||||||| | Sbjct 1025847 CCACCCCTTAGACGCAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCC 1025906 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | ||| || |||||| |||||| | ||| || || ||||| Sbjct 1025907 AGGGTTCGGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGG 1025966 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | ||||| || | | || | || || | || || Sbjct 1025967 ATCCCTTCCTTATC-CTGAATCTTTGTCTTGACATTATCAATAGTATCAGAACTTTCAAC 1026025 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | || || ||||| | ||||| || || || |||||| Sbjct 1026026 CTCAAGTGTGATGGTTTTACCGGTGAGGGTTTTGACAAAGATCTGCATA 1026074 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| |||||||| ||||||||| | || | ||| || | ||| Sbjct 1049510 TGAAGAGTCGACTCCTTTTGAATATTATAATCGGCAAGAGTTCGGCCGTCCTCCAACTGC 1049451 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||| || | ||||| || ||||| || || || || || ||| |||| Sbjct 1049450 TTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAGGAATCCCCTCCTTATCC-TGAATTTT 1049392 Query 139682 TGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | || | ||||| | ||| ||||||| || | |||||||||||| Sbjct 1049391 GGCCTTGACATTGTCAATCGTGTCAGAACCCTCAACCTCAAGAGTAATCGTCTTGCCGGT 1049332 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| || ||||||||||| Sbjct 1049331 TAGAGTTTTAACAAATATTTGCAT 1049308 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| |||||||| ||||||||| | || | ||| || | ||| Sbjct 1026327 TGAAGAGTCGACTCCTTTTGAATATTATAATCGGCAAGAGTACGGCCGTCCTCCAACTGC 1026386 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || ||||| |||| || | ||||| || ||||| ||||| || || || ||| |||| Sbjct 1026387 TTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTATCT-TGAATTTT 1026445 Query 139682 TGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | || | ||||||| ||| ||||||| || | |||||||||||| Sbjct 1026446 AGCCTTGACGTTGTCAATCGTGTCGGAACTCTCAACCTCAAGAGTAATCGTCTTGCCGGT 1026505 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 | ||||| || || || |||||| Sbjct 1026506 TAGAGTTTTGACAAAGATCTGCATA 1026530 >seq959 Length=5381930 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GC 139595 ||| || || | ||| | ||| | ||||| || || || || || ||||| || || || Sbjct 731835 GCCACCACGAAGACGTAGAACAAGGTGAAGTGTGGATTCCTTCTGTATGTTGTAGTCTGC 731776 Query 139596 TCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | || || |||||||||||| || || || |||| ||||||||||| || || | Sbjct 731775 T-AGGGTTCTGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCCGGTG 731717 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | ||||| || ||||| |||||| || | | || | ||||| | | ||| | Sbjct 731716 GAATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCGA 731657 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| ||| | ||||| || || | ||||| ||||| || |||||| Sbjct 731656 CCTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATA 731607 >seq937 Length=9237706 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAAT-CGC 139595 ||| || || || || | || | ||| | |||||||| || || |||||||||| ||| Sbjct 196098 GCCACCACGCAAGCGGAGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTATAATCCGC 196039 Query 139596 TCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | || || || |||||||| ||||| || |||| || || |||||||| || | Sbjct 196038 T-AGGGTTCTGCCATCCTCGAGCTGCTTACCGGCGAAGATAAGCCGCTGCTGATCAGGTG 195980 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | |||||||| || || ||| || || | | || | ||||||| || || | Sbjct 195979 GGATGCCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTGTCGGAGGATTCGA 195920 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | ||||| || || | ||||| ||||| || ||||| Sbjct 195919 CCTCCAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 195871 >seq964 Length=1826015 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | || || ||||| | |||||||| ||||| || || || || Sbjct 764046 CCTCCTCTTAACCTCAGCACCAAGTGCAGTGTAGACTCCTTTTGGATATTGTAGTCAGCA 764105 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| || ||||| |||||| | |||||||| || || Sbjct 764106 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCCGGTGGG 764165 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| |||||| || | | || | || || | | |||||| Sbjct 764166 ATTCCCTCCTTGTCC-TGAATTTTTGCCTTCACATTATCAATAGTATCAGAGCTCTCCAC 764224 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | ||||| |||||||| || || ||||| || ||||| Sbjct 764225 CTCAAGAGTAATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 764272 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || || ||||| |||||| | Sbjct 764502 CCACCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 764561 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || |||||| | |||| | ||||| || ||||| Sbjct 764562 AAAGTGCGACCYTCCTCCAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGAGGA 764621 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || || || ||| || || | | || | |||||| | | ||||||| Sbjct 764622 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATTGTGTCAGAGCTCTCCACC 764681 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||| | || || ||||| |||||||| Sbjct 764682 TCCAAGGTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 764728 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||| | ||| ||||| | || || || ||||||||||| ||||| | || || Sbjct 764967 AAACGAAGAACCAAGTGGAGGGTCGATTCCTTTTGAATGTTGTAATCAGCAAGAGTTCTG 765026 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| |||||||| || || ||| ||||||| | |||||| || || || || ||||| Sbjct 765027 CCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATCCCTTCC 765086 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 || || ||| ||| || | | || | ||||||| | ||| ||||| | || Sbjct 765087 TTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCGGAGCTCTCGACCTCGAGAGTA 765146 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || || | || || || || || ||||| Sbjct 765147 ATTGTCTTTCCAGTAAGGGTCTTAACAAAGATCTGCAT 765184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496057929416800