Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq940 167 3e-36 seq558 123 4e-23 >seq940 Length=8971605 Score = 167 bits (184), Expect = 3e-36 Identities = 402/606 (66%), Gaps = 2/606 (0%) Strand=Plus/Minus Query 49957 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 50016 || || ||||| || || || |||||||| |||| |||| ||||| || || || Sbjct 8502674 AAGCACGCGAAGTCACAATGGAGACCCTCATCTCGCGAGATTAACTCGTTCGAGAAGGTC 8502615 Query 50017 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA-CCCAGAAAA 50075 | ||||||||||| || || || || | ||||||||| | |||||| ||| || || Sbjct 8502614 AAACCGGGCATTAGCCCGCGTTTCTTTAACCAAAATATCG-CGCAAAAACTCCCCGAGAA 8502556 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATG 50135 ||| || || || || |||||||| || | | ||| || | | | | | | Sbjct 8502555 GAATATCCCCTCGACGCAAGCAAAGGCGACCAAACGCTCCGCAAATGATTCTCCGCCGTC 8502496 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| | ||||| | ||||||||||| || ||||| || || || || || | Sbjct 8502495 GATCCATCGGAGGGCCCACTTGGCCTTCTTTTCAACGCAAGGTATGGTCTCCATTGCGTG 8502436 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 |||||| || || || | || |||| || | |||| ||| || |||||||| Sbjct 8502435 AAAGAGCCTGTGCTTCTCGTCTGGGTCCTTAATYTAGGACTCGAGCAAGAGYCTATACAT 8502376 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || |||||||||||||| ||||| || || || |||||||| | ||||||| | Sbjct 8502375 CTCGGAATGAATGTTTTCGATGGCAATTTGGAAGCCGTAGAAGGCACGYGCCTCGGAGAC 8502316 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 ||| |||||| | |||||| | || | ||| || || || || || || || Sbjct 8502315 CTGAACTTCTTTCATGAATCGTCCGGCGAGATTCTCCAAAACGATGCCATCTGAGGKGGC 8502256 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATC 50435 ||||| |||| || | | ||||| || |||| || || || || | ||| | Sbjct 8502255 GAAAAATGCCAGAACGCGACTAATAAAGTGACGCTCGTCAGGGGTGAGGTTTTCCCATTG 8502196 Query 50436 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 50495 | || || | || | || || || || | ||||| || || |||||||| || || Sbjct 8502195 ACGCATGTCCTGGGAGAGGTCGACCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCTTTCTT 8502136 Query 50496 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 50555 ||||| | ||| || | | | ||||| ||||| || || || | | ||| ||||| Sbjct 8502135 GTACATCTCCCAAATCTGAGGGTATTGAATTGGAAACATGCAGAAGCGGTCTGGGTTTGG 8502076 Query 50556 TGCAAG 50561 ||| || Sbjct 8502075 TGCCAG 8502070 >seq558 Length=4929555 Score = 123 bits (136), Expect = 4e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| || || | || | ||| |||| ||| | || |||| |||||||| ||||||| Sbjct 349844 CCTCCTTGGTCCACATAACGAGCAGTGTCATTGAATACCCTCAGCATTGGAACAATACCA 349785 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| ||||| || || ||||| |||||| |||||||||| ||| || ||| Sbjct 349784 TTGGATGTCCCATTTGTTCCTCTAATATAACTTCCAGTGGCACGAATGTTATGAACAGAT 349725 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| || || || || ||| ||| | || ||| || | |||||||| ||| Sbjct 349724 ACACCAATCCCTCCAGCTGATTTGCTGATAACAGCRCATTCCTTGAGGGTATCATATATG 349665 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||| || || ||||| | || ||||||||| Sbjct 349664 CCCTCAATGCTGTCTTCTTTCATGCACACCAGGAAACAGCTA 349623 Score = 89.7 bits (98), Expect = 7e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| ||||| || | |||||| || || || ||||||||| || ||||| | || Sbjct 349508 AGTTCCAGCATTGAAAAGGGTAGGGGATGCATGGGTAAACCATCGTTGAGACATCAAATG 349449 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 || || ||||| ||||| ||||| | ||| || ||||| || | || | ||| | Sbjct 349448 ATATGTTCTGATAGCAGATTCAATATCATCCTTG-TGGATTCCAACAGATACCCTCATCA 349390 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATT-TATTTTCAACAAGTAAGATTTTTCC 80511 |||||||||| || ||||| || | ||| | || | || || | |||||| | || Sbjct 349389 ACATGTGCTGTGGCCTTTCTAC-AACTTTTCCTTGGACCTTTAAGAGGTAAGACCTCTCA 349331 Query 80512 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 | ||||| || ||||| || | || ||||||||| || || || || Sbjct 349330 AGTGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGAT 349281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260010185560