Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq940 95.1 1e-14 seq959 82.4 7e-11 >seq940 Length=8971605 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 ||| ||||| || |||||||| || |||||||||| || | ||||| || || || Sbjct 8502675 TAAGCACGCGAAGTCACAATGGAGACCCTCATCTCGCGAGATTAACTCGTTCGAGAAGGT 8502616 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 || || ||||| | || ||||| |||||||||||||| || ||| ||| || || Sbjct 8502615 CAAACCGGGCATTAGCCCGCGTTTCTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAA 8502556 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT 14039 |||||| ||||| || |||||| || | || || || |||| ||| || Sbjct 8502555 GAATATCCCCTCGACGCAAGCAAAGGCGACCAAACGCTCCGCAAATGATTCT 8502504 >seq959 Length=5381930 Score = 82.4 bits (90), Expect = 7e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||| ||||| ||||| ||||| ||||| || ||||| ||||| | Sbjct 2916817 CAAGCAAAGTCACAGTGAAGACCCTCGTCTCTTGATATAAGCTCATTTGAGAATGTCAGG 2916758 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 |||||||||||||| | || || | ||||||||| ||| |||| | | || |||||| Sbjct 2916757 CCTGGCATCAATCCCCTCTTCTTAAGCCAAAATATAGCA-CAAAAG-CTGGGGAAAGAA 2916701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479722129328600