Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq977 93.3 3e-14 seq964 84.2 2e-11 >seq977 Length=5547227 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || || |||| | || | ||||| ||| |||||| || | || ||||||| Sbjct 1049307 GCCCCCGCGGAGTCGGAGAACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCGGC 1049248 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| || | ||| |||||||| ||||| | ||||| ||||| | || Sbjct 1049247 GAGCGTCCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGCTGATCTGGAGG 1049188 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| || || || |||| | ||||| | ||| || || | |||||| Sbjct 1049187 AATACCCTCCTTATCTTGGATCTTAGCCTTGACATTATCAATGGTATCAGAACTCTCGAC 1049128 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || |||||||| |||||||||||||||||||| || Sbjct 1049127 CTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAAATTTGCATCTT 1049077 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || || |||| ||| | ||| ||||||||| | ||| ||||||| Sbjct 1049534 CCACCACGGAGCCTCAAGACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCA 1049475 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| ||||| || || || ||||| || | || ||| || || | || Sbjct 1049474 AGAGTTCGGCCGTCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAGGA 1049415 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | | ||||| || ||| ||||| | |||| || Sbjct 1049414 ATCCCCTCCTTATC-CTGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCAAC 1049356 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || |||||||||||||| ||||| |||||||| Sbjct 1049355 CTCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTAACAAATATTTGCAT 1049308 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || || || | ||| | || |||||| || | ||||||||| | | Sbjct 1049762 CCACCACGAAGCCTCAAAACGAGATGTAGGGTAGACTCCTTCTGAATATTGTAATCCGCC 1049703 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| ||||| || || || ||||| |||| ||||| ||||| | || Sbjct 1049702 AAGGTTCTGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGA 1049643 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| || | || || || | | ||| || | ||| ||||| Sbjct 1049642 ATGCCTTCCTTATC-CTGAATCTTTGCCTTCACGTTGTCTATTGTATC-CGAGCTCTCGA 1049585 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || || ||||| ||||| |||||||||||||| Sbjct 1049584 CCTCCAAGGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1049536 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | || | ||||| ||| |||||| || | || ||||||| Sbjct 1026531 CCACCACGGAGACGGAGAACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCT 1026590 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | |||||||||||| || || | ||||| ||||||| || Sbjct 1026591 AGGGTCCGACCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGG 1026650 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | ||||| | | | || ||| | |||||| Sbjct 1026651 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTATCGGAACTCTCGACC 1026710 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| |||||||| ||||||||||| || ||||| Sbjct 1026711 TCGAGAGTGATGGTTTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1026757 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 12/228 (5%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || ||||| || | ||| | ||| ||||||||| | |||||||| | Sbjct 4466246 CCACCGCGGAGCCTTAAAACAAGATGCAAAGTAGACTCCTTTTGAATCTTGTAATCACCC 4466187 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||| | ||||| || || ||||| |||||||| |||||||||||| || Sbjct 4466186 AAT----------CCTCCAACTGCTTTCCGGCGAAAATCAAGAGCTGTTGATCGGGAGGA 4466137 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | |||||||| || ||| | || || | ||| | ||| ||| |||||| Sbjct 4466136 ATGCCTTCTTTGTCTTGAATCTTGGCCTTAACATTATCAATCGCGTC-AGAGCTCTCGAC 4466078 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| || || || ||||| ||||||||||| |||||||| Sbjct 4466077 TTCCAACGTTACCGTCTTACCAGTTAGGGTTTTCACAAAGATTTGCAT 4466030 >seq964 Length=1826015 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||| |||| ||| |||||| || | |||||||||| | Sbjct 764502 CCACCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 764561 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || |||| || ||||| ||||||||||| | ||| || || | || Sbjct 764562 AAAGTGCGACCYTCCTCCAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGAGGA 764621 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| | || || || | | |||||| ||| ||| || Sbjct 764622 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATTGTGTC-AGAGCTCTCCAC 764680 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| ||||| || || || |||||||| Sbjct 764681 CTCCAAGGTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 764728 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| || | || |||||| | || |||||||| || || ||||| Sbjct 763853 CTCCTTCTGGATGTTGTAGTCAGCCAGAGTACGTCCATCTTCCAATTGCTTACCAGCAAA 763912 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||||| || || |||| || | ||| || || || ||| | || || | Sbjct 763913 GATCAATCTTTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATTTTAGCCTTCACATT 763972 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||||| | ||| || || | || || || ||||| || || || ||||| Sbjct 763973 ATCAATTGTGTCGGAACTCTCCACCTCCAAAGTGATGGTCTTTCCTGTCAGGGTCTTCAC 764032 Query 43098 AAAAATTTGCATT 43110 |||||| |||||| Sbjct 764033 AAAAATCTGCATT 764045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381365049664782