Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq940 170 3e-37 seq558 109 7e-19 >seq940 Length=8971605 Score = 170 bits (188), Expect = 3e-37 Identities = 403/606 (67%), Gaps = 2/606 (0%) Strand=Plus/Minus Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTG 42121 || || ||||| || || || ||||||||||||| ||||| ||||| || || || Sbjct 8502674 AAGCACGCGAAGTCACAATGGAGACCCTCATCTCGCGAGATTAACTCGTTCGAGAAGGTC 8502615 Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA-GAAAA 42180 | ||||||||||| || || || || | ||||||||| | |||||| ||| || || Sbjct 8502614 AAACCGGGCATTAGCCCGCGTTTCTTTAACCAAAATATCG-CGCAAAAACTCCCCGAGAA 8502556 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG 42240 ||| || || || || |||||||| | | | ||| || | | | | | | Sbjct 8502555 GAATATCCCCTCGACGCAAGCAAAGGCGACCAAACGCTCCGCAAATGATTCTCCGCCGTC 8502496 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | ||||| | ||||||||||| || ||||| || || || || || | Sbjct 8502495 GATCCATCGGAGGGCCCACTTGGCCTTCTTTTCAACGCAAGGTATGGTCTCCATTGCGTG 8502436 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 |||||| || || || | || |||| || | |||| ||| || |||||||| Sbjct 8502435 AAAGAGCCTGTGCTTCTCGTCTGGGTCCTTAATYTAGGACTCGAGCAAGAGYCTATACAT 8502376 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 || |||||||||||||| ||||| || || || |||||||| | ||||||| || Sbjct 8502375 CTCGGAATGAATGTTTTCGATGGCAATTTGGAAGCCGTAGAAGGCACGYGCCTCGGAGAC 8502316 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 ||| |||||| | |||||| | || | ||| || || || || || || || Sbjct 8502315 CTGAACTTCTTTCATGAATCGTCCGGCGAGATTCTCCAAAACGATGCCATCTGAGGKGGC 8502256 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATC 42540 ||||| |||| || | | ||||| | ||||| || || | || | ||| | Sbjct 8502255 GAAAAATGCCAGAACGCGACTAATAAAGTGACGCTCGTCAGGGGTGAGGTTTTCCCATTG 8502196 Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 | || || | || | || || || || | ||||| || || || ||||| || || Sbjct 8502195 ACGCATGTCCTGGGAGAGGTCGACCTCCTCGGCAGTCCAGAAGGAGGCCTCTGCTTTCTT 8502136 Query 42601 ATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGG 42660 ||||| | ||| || | | | ||||||||||| || || || | | ||| ||||| Sbjct 8502135 GTACATCTCCCAAATCTGAGGGTATTGAATTGGAAACATGCAGAAGCGGTCTGGGTTTGG 8502076 Query 42661 TGCAAG 42666 ||| || Sbjct 8502075 TGCCAG 8502070 >seq558 Length=4929555 Score = 109 bits (120), Expect = 7e-19 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| || || | || | ||| |||| ||| | || |||| |||||||| ||||||| Sbjct 349844 CCTCCTTGGTCCACATAACGAGCAGTGTCATTGAATACCCTCAGCATTGGAACAATACCA 349785 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||||| ||||| || || ||||| |||||| |||||||||| || || ||| Sbjct 349784 TTGGATGTCCCATTTGTTCCTCTAATATAACTTCCAGTGGCACGAATGTTATGAACAGAT 349725 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || || || ||| ||| | || ||| || | |||||||| ||| Sbjct 349724 ACACCAATCCCTCCAGCTGATTTGCTGATAACAGCRCATTCCTTGAGGGTATCATATATG 349665 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||||| || || || || ||||| | || ||||||||| Sbjct 349664 CCCTCAATGCTGTCTTCTTTCATGCACACCAGGAAACAGCTA 349623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671130986934040