Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq959 87.8 2e-12 seq978 86.0 6e-12 seq977 86.0 6e-12 seq946 86.0 6e-12 >seq959 Length=5381930 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 143015 ||| || || | ||| | ||| | |||| ||| ||||| || ||||||||||| || || Sbjct 731835 GCCACCACGAAGACGTAGAACAAGGTGAAGTGTGGATTCCTTCTGTATGTTGTAGTCTGC 731776 Query 143016 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | || || ||||||||| || || || || |||| ||||||||||| || || | Sbjct 731775 T-AGGGTTCTGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCCGGTG 731717 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | ||||| || ||||| ||||| || | | || | ||||| | | || | Sbjct 731716 GAATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCGA 731657 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | |||| || | ||||| || || | ||||| ||||| || |||||| Sbjct 731656 CCTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATA 731607 >seq978 Length=8767375 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | || || || | || || || ||||| |||||||||||| Sbjct 3246532 CCTCCTCTCAGACGGAGGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCGGCA 3246591 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||| |||||||| || || || ||||||| | ||||||||| ||||| Sbjct 3246592 AGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCTGGAGGG 3246651 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || ||| ||| | | || | ||||| | | || || Sbjct 3246652 ATTCCTTCCTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCGGAGCTCTCGACC 3246711 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| ||||| | || || ||||| || ||||| Sbjct 3246712 TCGAGAGTAATTGTCTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 3246758 >seq977 Length=5547227 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || ||||| ||||| | ||| || ||||| | ||||| ||| Sbjct 917727 GTTGATTCCTTGTGGATGTTATAATCTGCAAGTGTCCTGCCATCTTCAAACTGTTTGCCA 917668 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | |||||||| |||||||| ||||| |||||||||||||| ||| || || Sbjct 917667 GCAAAAATCAGACGCTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGAATCTTGGCCTTG 917608 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || || || | ||| | ||||| || ||||| || Sbjct 917607 ACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTAATGGTCTTCCCAGTCAAAGTC 917548 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 917547 TTCACAAAGATCTGCAT 917531 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | ||| | |||| || ||||| || || ||||| ||||| | Sbjct 1025619 CCGCCTCTAAGACGGAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTATAATCAGCC 1025678 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| ||||| || ||||| |||| || | |||||||| ||||| Sbjct 1025679 AGAGTACGGCCATCTTCAAGTTGCTTCCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGA 1025738 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| ||| ||| || | | || | || || | | || || Sbjct 1025739 ATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCTATGGTATCTGAGCTCTCAACC 1025798 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||| |||||||||||||| |||||||| ||||| Sbjct 1025799 TCCAGCGTAATCGTCTTCCCGGTCAATGTTTTAACGAATATCTGCAT 1025845 >seq946 Length=5553863 Score = 86.0 bits (94), Expect = 6e-12 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | |||||| || |||| ||| ||||||||||| || || || ||| | Sbjct 333427 CCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATATTATAGTCGGCC 333486 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | ||| ||||||||| | ||||| | |||||||| ||||| Sbjct 333487 AAAGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAGGAGGA 333546 Query 143078 ATGCCTTCTTTGTC 143091 || |||||||| || Sbjct 333547 ATACCTTCTTTKTC 333560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507008195411280