Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq977 114 9e-21 seq964 105 5e-18 seq959 102 6e-17 seq978 100 2e-16 >seq977 Length=5547227 Score = 114 bits (126), Expect = 9e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| ||||||| | || |||| ||| || || || || || || ||||| || Sbjct 917531 TGCCACCCCTCAATCGCAGCACCAAATTAAGAGTTGATTCCTTCTGAATTTTGTAGTCAG 917472 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || |||||| | ||||| | ||| |||||||| ||||||| ||||| ||||| | Sbjct 917471 CAAGGATTCTCCCATCTTCAAGTTGCTTGCCAGCAAATATCAAGCGTTGCTGGTCTGGAG 917412 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||| |||| |||||| ||| || ||| | || | | ||| |||| Sbjct 917411 GAATGCCTTCCTTGTTCTGAATTTTAGCT-TTAACATTGTCAACTGCATCTGAGCTTTCG 917353 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | |||||||||||| || || ||||| || ||||| || || || Sbjct 917352 ACTTCAAGGGTAATGGTTTTCCCAGTAAGAGTCTTCACAAAGATCTGTAT 917303 Score = 113 bits (124), Expect = 3e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| ||||| |||||||| ||||| ||||| || ||| ||||||| || || Sbjct 1025870 ATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCCAGGGTTCGGCCGTCTTCCAACTG 1025929 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | ||||| | ||||||||| || || ||||| || || ||| || Sbjct 1025930 CTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGGATCCCTTCCTTATCCTGAATCTT 1025989 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 |||| ||| | || || ||||| | |||| || || | || ||||||||||| || Sbjct 1025990 TGTCTTGACATTATCAATAGTATCAGAACTTTCAACCTCAAGTGTGATGGTTTTACCGGT 1026049 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| || |||||| Sbjct 1026050 GAGGGTTTTGACAAAGATCTGCATA 1026074 Score = 104 bits (114), Expect = 2e-17 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGC 15207 || ||||| | ||| ||||| || || || || || |||||||| || || |||| | Sbjct 1049750 CTCAAAACGAGATGTAGGGTAGACTCCTTCTGAATATTGTAATCCGCCAAGG-TTCTGCC 1049692 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 |||||| || || || ||||| | |||| || || || || ||||| ||||| || Sbjct 1049691 GTCTTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCTTCCTT 1049632 Query 15268 GTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 || ||| ||||| ||| || | ||||| ||||| | || || || ||||||| Sbjct 1049631 ATCCTGAATCTTTGC-CTTCACGTTGTCTATTGTATCCGAGCTCTCGACCTCCAAGGTAA 1049573 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || ||||| || || ||||| ||||||||||||||| Sbjct 1049572 TCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCATA 1049535 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 15143 CTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATT 15202 ||||||| || || ||| || || || || || || ||||| ||||| || | Sbjct 917751 CTCAATCACAACACCTGATGTAGAGTTGATTCCTTGTGGATGTTATAATCTGCAAGTGTC 917692 Query 15203 CTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCT 15262 || | ||||| || ||||||||||| | |||| ||| || || || ||||| ||| Sbjct 917691 CTGCCATCTTCAAACTGTTTGCCAGCAAAAATCAGACGCTGCTGATCAGGAGGAATGCCT 917632 Query 15263 TCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAG 15322 |||||||| ||| ||| ||| ||| | || || || ||| | || || || || Sbjct 917631 TCTTTGTCCTGAATCTTGGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAA 917572 Query 15323 GTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || || |||| ||| || ||||| || ||||| Sbjct 917571 GTAATGGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 917531 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| |||||||| || || || ||||| |||||| ||| | | |||| || Sbjct 1026548 AACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCTAGGGTCCGACCGTCCTC 1026607 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||||||| ||| | || | || || || ||| || || || || ||||| Sbjct 1026608 GAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCTTG 1026667 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | || ||||||||| | | || || || | || |||||||| Sbjct 1026668 GATCTTAGCCTTGACATTATCGATGGTATCGGAACTCTCGACCTCGAGAGTGATGGTTTT 1026727 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| ||||| || ||||| Sbjct 1026728 ACCGGTTAGGGTTTTCACAAAGATCTGCAT 1026757 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAAT-CGCTTAGAATTCTCGC 15207 || || || | ||||||||| || || || || |||||||||| ||| || |||| | Sbjct 1026087 CTCAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAAG-GTTCTGCC 1026145 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||| || || || || || || | |||| || || || || ||||| ||||| || Sbjct 1026146 GTCCTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGAATCCCTTCCTT 1026205 Query 15268 GTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 || ||| ||||| ||| || | ||||| ||||| | || || || || |||| Sbjct 1026206 ATCTTGAATCTTTGC-CTTCACGTTGTCTATCGTATCAGAGCTCTCGACCTCCAACGTAA 1026264 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || ||||| || || ||||| |||||||||||||| Sbjct 1026265 TCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1026301 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| | |||||| |||||||| |||||||| || || ||| | || Sbjct 917058 AAGACAAGATGTAAGGTGGACTCTTTTTGAATGTTGTAGTCAGCAAGGGTTCGACCATCC 916999 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| ||||| | ||||| | ||| || || ||| || ||||| ||||| Sbjct 916998 TCCAGTTGTTTCCCAGCAAAGATCAATCTTTGCTGATCAGGTGGGATACCTTCCTTGTCT 916939 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| ||||| ||| || | || ||||| || | | || || || | || ||||| Sbjct 916938 TGAATCTTTGC-CTTGGCATTATCGATGGTGTCAGAACTCTCAACCTCAAGCGTGATGGT 916880 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| | || || ||||||||| |||| Sbjct 916879 CTTGCCTGTGATGGTCTTAACAAAAATTYGCAT 916847 >seq964 Length=1826015 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || |||||||| || ||| | | | ||||| ||||| Sbjct 763842 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTACGTCCATCTTCCAATTGC 763901 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||| | ||| |||||| ||||| || || ||||| ||||| Sbjct 763902 TTACCAGCAAAGATCAATCTTTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATTTTA 763961 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || ||| | | || || || || || ||||| || |||||| Sbjct 763962 GCCTTCACATTATCAATTGTGTCGGAACTCTCCACCTCCAAAGTGATGGTCTTTCCTGTC 764021 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 764022 AGGGTCTTCACAAAAATCTGCAT 764044 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | ||| || || ||||| || || ||||| ||||||||||| Sbjct 764958 CCTCCCCTCAAACGAAGAACCAAGTGGAGGGTCGATTCCTTTTGAATGTTGTAATCAGCA 765017 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| |||| || | || || || || | |||| | ||| ||||| ||| Sbjct 765018 AGAGTTCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGA 765077 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| || || || ||||| ||| ||| | |||||||| ||| | || || Sbjct 765078 ATCCCTTCCTTATCTTGGATCTTTGC-CTTAACATTGTCTATGGTGTCGGAGCTCTCGAC 765136 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375 || | ||||| || || || || || || || ||||| || ||||| | | |||||| Sbjct 765137 CTCGAGAGTAATTGTCTTTCCAGTAAGGGTCTTAACAAAGATCTGCATCTGTTTAAATAA 765196 Query 15376 AA 15377 || Sbjct 765197 AA 765198 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || |||||||| | || || ||||||||||| || || || ||||| || || Sbjct 764274 CCTCCCCTCAATCTGAGGACCAAGTGAAGGGTGGATTCCTTCTGAATGTTATAGTCAGCA 764333 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | |||| || | || ||||| || | ||||| | || ||||| ||| Sbjct 764334 AGGGTGCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGG 764393 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| |||||| ||| || ||| | || |||||||| | | || || Sbjct 764394 ATACCTTCCTTGTCTTGAATTTTAGCT-TTCACATTGTCAATGGTATCAGAACTCTCGAC 764452 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || || || || || || || ||||| Sbjct 764453 CTCCAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 764500 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || || || ||||||||||| ||| | | | ||||| Sbjct 764748 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGAGTACGACCATCTTCC 764807 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || |||||| | ||||| | || ||||| ||||| ||||| || || | Sbjct 764808 AGCTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGA 764867 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||| ||| | || || || | ||| ||||| || Sbjct 764868 ATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTCTTT 764927 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || ||||| ||||||||| Sbjct 764928 CCGGTGAGGGTCTTAACAAAGATTTGCATA 764957 >seq959 Length=5381930 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| || || ||||||||||| || ||| |||| ||||||| | || Sbjct 731810 TGAAGTGTGGATTCCTTCTGTATGTTGTAGTCTGCTAGGGTTCTGCCGTCTTCGAGCTGC 731751 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || | |||||| ||||| |||||| || || ||||| |||||| Sbjct 731750 TTCCCGGCGAAGATGAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTG 731691 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || | || || || | ||| || || || || || Sbjct 731690 GCCTTGACATTGTCGATGGTGTCAGAAGACTCGACCTCAAGGGTGATAGTCTTCCCCGTG 731631 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 || ||||| || ||||| |||||| ||| || Sbjct 731630 AGGGTTTTGACGAAAATCTGCATACTTGGAA 731600 >seq978 Length=8767375 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || |||| || | ||| || |||||||| || || || || ||||||||||| Sbjct 3246076 CCTCCCCTCAGCCTGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCA 3246135 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||||| | || ||||| || ||||||| | || ||||| ||| Sbjct 3246136 AGAGTGCGCCCGTCTTCAAGCTGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGTGGG 3246195 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || ||||||| || || | || |||||||| | | || || Sbjct 3246196 ATACCCTCCTTATCTTGAATTTTGGCTTTCACGTTGTCAATGGTATCAGAACTCTCGACT 3246255 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||||| || || || ||||| || || ||||| |||||| Sbjct 3246256 TCCAGAGTAATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCATA 3246303 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | || || || |||||||| || || || |||||||| ||| | Sbjct 3246304 CCACCTCTCAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCT 3246363 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | |||| || | ||| || || || | |||| | || ||||| ||| Sbjct 3246364 AGAGTGCGACCGTCCTCGAGTTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 3246423 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| || ||| | || ||||| ||| | || || Sbjct 3246424 ATTCCTTCCTTATCCTGTATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACT 3246483 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| || || || || || || || || ||||| ||||||||| Sbjct 3246484 TCAAGGGTGATAGTCTTTCCGGTGAGGGTCTTAACAAATATTTGCATA 3246531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362174878636239