Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq977 111 1e-19 seq964 95.1 1e-14 >seq977 Length=5547227 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| ||||||||||||||||||| ||| || |||| |||| ||| || || Sbjct 1049732 GTAGACTCCTTCTGAATATTGTAATCCGCCAAGGTTCTGCCGTCTTCCAACTGCTTCCCA 1049673 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || | |||||||||| || | ||| || || || ||| || || Sbjct 1049672 GCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTGAATCTTTGCCTTC 1049613 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | | ||||| | || ||| || | |||||| || ||||| |||| || Sbjct 1049612 ACGTTGTCTATTGTATC-CGAGCTCTCGACCTCCAAGGTAATCGTCTTACCAGTTAGGGT 1049554 Query 19024 TTTGACAAAAATTTGCAT 19041 |||||||||||||||||| Sbjct 1049553 TTTGACAAAAATTTGCAT 1049536 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || |||| || | || ||||||||||||||||| ||||| || Sbjct 1049534 CCACCACGGAGCCTCAAGACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCA 1049475 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | ||||||||| ||| || || ||| | || ||||||||||| ||| || Sbjct 1049474 AGAGTTCGGCCGTCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAGGA 1049415 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| || || |||||| || || | | | | || || | ||| Sbjct 1049414 ATCCCCTCCTTATCCTGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCAACC 1049355 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||| || || || |||| |||||| ||||| |||||||| Sbjct 1049354 TCAAGAGTAATCGTCTTGCCGGTTAGAGTTTTAACAAATATTTGCAT 1049308 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||||||||| ||||| || | || | ||||||||| ||| || || Sbjct 1026333 GTCGACTCCTTTTGAATATTATAATCGGCAAGAGTACGGCCGTCCTCCAACTGCTTCCCA 1026392 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || ||||||||||| ||| || | |||||| || || |||||| || Sbjct 1026393 GCGAAGATGAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGAATTTTAGCCTTG 1026452 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | || ||| | ||| || | ||||| || || || |||| |||| Sbjct 1026453 ACGTTGTCAATCGTGTCGGAACTCTCAACCTCAAGAGTAATCGTCTTGCCGGTTAGAGTT 1026512 Query 19025 TTGACAAAAATTTGCAT 19041 |||||||| || ||||| Sbjct 1026513 TTGACAAAGATCTGCAT 1026529 >seq964 Length=1826015 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| ||||| | ||||| ||||| |||||||||||||| |||||||| || | Sbjct 764044 TTCCTCCTCTTAACCTCAGCACCAAGTGCAGTGTAGACTCCTTTTGGATATTGTAGTCAG 764103 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||| ||||| || || || | || | |||||||||||| | Sbjct 764104 CAAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCCGGTG 764163 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| |||||| || || | | | |||||| |||| Sbjct 764164 GGATTCCCTCCTTGTCCTGAATTTTTGCCTTCACATTATCAATAGTATCAGAGCTCTCCA 764223 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | |||||||| || || || || || || || || || |||||| Sbjct 764224 CCTCAAGAGTAATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCATT 764273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414567853498726