Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq977 102 6e-17 >seq977 Length=5547227 Score = 102 bits (112), Expect = 6e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||| ||| |||||| |||||||||||| |||||||| | || | || || Sbjct 1025864 CACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCCAGGGTTCGGCCGTCTTC 1025923 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC-TG 44030 ||| || || || ||||| ||||| | ||| |||||| |||| | ||||| ||||| || Sbjct 1025924 CAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGGATCCCTTCCTTATCCTG 1025983 Query 44031 AAATTTTTTGT-TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || | ||||| ||||| || ||| |||||| | || || || | || || ||| Sbjct 1025984 AA--TCTTTGTCTTGACATTATCAATAGTATCAGAACTTTCAACCTCAAGTGTGATGGTT 1026041 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| | || || ||||| || ||||| Sbjct 1026042 TTACCGGTGAGGGTTTTGACAAAGATCTGCAT 1026073 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| ||||||| |||||| |||||| || || || || || |||||||| | Sbjct 917756 CCTCC-CTCAATCACAACACCTGATGTAGAGTTGATTCCTTGTGGATGTTATAATC-TGC 917699 Query 43955 AATTGACGCT--CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || | || |||| || || ||||| || ||||| |||| || ||||| || ||| Sbjct 917698 AAGTGTC-CTGCCATCTTCAAACTGTTTGCCAGCAAAAATCAGACGCTGCTGATCAGGAG 917640 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||||| || ||| || ||||| | ||| ||| || | ||| | Sbjct 917639 GAATGCCTTCTTTGTCCTGAATCTTGGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAA 917580 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || | ||||| || || || || |||||||||||||| || |||||| Sbjct 917579 CCTCCAAAGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCATG 917530 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 || || |||| ||| || || ||| |||||||||||||||||| | || | Sbjct 1049522 CTCAAGACCAGATGAAGAGTCGACTCCTTTTGAATATTATAATCGGCAAGAGTTCGGCCG 1049463 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || ||||| || || || ||||| || | | ||||||||| |||| | || || ||| Sbjct 1049462 TCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAGGAATCCCCTCCTTA 1049403 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 || |||||| ||||| | ||| || || | ||| || || | ||||| Sbjct 1049402 TCCTGAATTTTGGCCTTGACATTGTCAATCGTGTCAGAACCCTCAACCTCAAGAGTAATC 1049343 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || ||||||| ||| || ||||||||||||||| Sbjct 1049342 GTCTTGCCGGTTAGAGTTTTAACAAATATTTGCATG 1049307 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || ||||||| | |||||||| || || || || ||||| || || || Sbjct 917529 CCACCCCTCAATCGCAGCACCAAATTAAGAGTTGATTCCTTCTGAATTTTGTAGTCAGCA 917470 Query 43955 A--ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | ||| | | |||| || | ||| || || ||||||||||| ||||||||||| ||| Sbjct 917469 AGGATT--CTCCCATCTTCAAGTTGCTTGCCAGCAAATATCAAGCGTTGCTGGTCTGGAG 917412 Query 44013 GTACACCTTCTTTAT-CTGAAATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTC 44070 | | ||||| || | ||||| |||| | || | ||| | |||| | ||||| || Sbjct 917411 GAATGCCTTCCTTGTTCTGAA--TTTTAGCTTTAACATTGTCAACTGCATCTGAGCTTTC 917354 Query 44071 CACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | ||||| ||||| || || | |||||||||||| || || || Sbjct 917353 GACTTCAAGGGTAATGGTTTTCCCAGTAAGAGTCTTCACAAAGATCTGTAT 917303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354773366948892